GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002840-TA|BGIBMGA002840-PA|IPR000633|Vinculin,
IPR000357|HEAT
         (2615 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    27   2.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   8.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 2174 LTKTLDA-ERQIQHVSDVRQAVRYAAADLKGDLL---PGFC 2210
            LTK   A E Q+Q VSD   A  YA  D+  +L    PG C
Sbjct: 460  LTKQNTAFENQLQFVSDAVMAFAYAFRDMHKELCDGKPGLC 500


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 928 YVFPVVKLGLTKELSEKDEMTMLNGLAVITHHVSARPH 965
           Y+  + KL    E  ++ E+T  N  +V+ HH +ARPH
Sbjct: 94  YIEQLTKLNNAVE-EKRPELT--NRKSVVFHHDNARPH 128


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,049
Number of Sequences: 429
Number of extensions: 23665
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 3
length of query: 2615
length of database: 140,377
effective HSP length: 70
effective length of query: 2545
effective length of database: 110,347
effective search space: 280833115
effective search space used: 280833115
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)