GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002839-TA|BGIBMGA002839-PA|undefined
         (481 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    28   0.13 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.89 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.7  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 0.13
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 275 PEPGTSQTVQTESAKTEAAKTDEESSTKQEKIENSVSHSSDADESL 320
           PEP  +QT  TES  T+A++   ESST Q+        S +  + +
Sbjct: 399 PEPQPTQT--TESEPTQASEQPTESSTTQKPQTTKTPESGNESDGV 442


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 247 QKPNPSPEKTKESKFKKLRTGSGTSDAEPEPGTSQTVQTES 287
           +K + S E+   + FK   + S + D  P PG     QT S
Sbjct: 81  KKEDESDEEKPTTSFKLKDSSSDSEDERPRPGGGTKYQTFS 121


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 350 DKKRQKLDSGIGEENSPGGSSPEKTEPRSDHS 381
           ++K   +D    EE S G  S  K   R+DHS
Sbjct: 39  EEKSSLIDLTESEEKSGGSYSSNKNVSRADHS 70


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 353 RQKLDSGIGEENSPGGSSPEKTEPRSDHSDAVQSDGSLEEDDD 395
           ++++D     EN        + E R +   +  S+G+ EED+D
Sbjct: 867 KKEVDEEERLENHTSVKIKREAEDRDEDERSFHSNGAKEEDED 909


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.305    0.123    0.336 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,722
Number of Sequences: 317
Number of extensions: 2207
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 481
length of database: 114,650
effective HSP length: 59
effective length of query: 422
effective length of database: 95,947
effective search space: 40489634
effective search space used: 40489634
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 45 (22.2 bits)