GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002838-TA|BGIBMGA002838-PA|IPR000682|Protein-L-
isoaspartate(D-aspartate) O-methyltransferase
         (151 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   3.5  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   8.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   8.0  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    20   8.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 9   RDNNELIDNLMRGKYIRSAEV-ENVFRALDRADYMSSEVRDQAY 51
           RD  +L  N  +  +I    + ENV RA D+A Y       Q Y
Sbjct: 546 RDGRQLPINRKQKVFINGTLIIENVERASDQATYDCVAKNSQGY 589


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 124 KLSHFIENSPTLDEFDFCEPKFFC 147
           ++S+    +P + ++D  +P+ FC
Sbjct: 530 EISYMAPPAPLISQYDDIDPQQFC 553


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 62  HMSAPCIYSEVMEALELKTGLTFLNVGSGTG 92
           H+S P    E  E L  K G+T   V +  G
Sbjct: 252 HLSNPYPSEEAKEELARKCGITVSQVSNWFG 282


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 110 GIEVNSFVVDYSNKKLSHFIENSPTL 135
           G+++ S     S+  +   +EN+PTL
Sbjct: 218 GLDIASITAQASSFVVWPLVENNPTL 243


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 110 GIEVNSFVVDYSNKKLSHFIENSPTL 135
           G+++ S     S+  +   +EN+PTL
Sbjct: 218 GLDIASITAQASSFVVWPLVENNPTL 243


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 124 KLSHFIENSPTLDEFDF 140
           KLSHF+  +P  D  +F
Sbjct: 18  KLSHFLSITPNYDFENF 34


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,721
Number of Sequences: 317
Number of extensions: 1425
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 151
length of database: 114,650
effective HSP length: 52
effective length of query: 99
effective length of database: 98,166
effective search space:  9718434
effective search space used:  9718434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)