GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002838-TA|BGIBMGA002838-PA|IPR000682|Protein-L-
isoaspartate(D-aspartate) O-methyltransferase
         (151 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517...    48   3e-06
05_07_0351 + 29468247-29469851                                         33   0.13 
07_01_1105 - 10173039-10173156,10173715-10173716,10174550-101745...    27   6.4  
04_01_0067 - 673381-673387,675388-678131                               27   8.5  
03_05_0981 - 29391027-29391099,29391227-29391350,29391443-293915...    27   8.5  
03_01_0254 + 1983806-1984882                                           27   8.5  
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6...    27   8.5  

>04_04_0268 -
           24050721-24050971,24051112-24051276,24051479-24051749,
           24052344-24052517
          Length = 286

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 11  NNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMSAPCIY 69
           N  L++ L +   +R+ +V  V  ++DRA +++  +    Y D     G +  +SAP ++
Sbjct: 69  NKALVEYLKQYGAVRTDKVAEVMESIDRALFVAEGLTP--YTDSPMPIGYNATISAPHMH 126

Query: 70  SEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIE 112
           +  +E L+  L+ G+  L+VGSG+GYL     +++G  G   GIE
Sbjct: 127 ATCLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIE 171


>05_07_0351 + 29468247-29469851
          Length = 534

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 21  GKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRN-GSLHMSAPCIYSEVMEALELK 79
           GK   +  + N +R    + +       +A  DL +    S   +  C Y +VM+   + 
Sbjct: 174 GKSKVTKVIMNWYRPAKSSSWRRFRCSQRACMDLPYNTCESPDQNTSCTYYQVMKDSTIT 233

Query: 80  TGL---TFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNS 115
           +G+       V    G +  L GL+IG S   HG  VNS
Sbjct: 234 SGIYGQEKATVAVSDGTMKKLPGLVIGCSTFEHGGAVNS 272


>07_01_1105 -
           10173039-10173156,10173715-10173716,10174550-10174584,
           10174696-10174765,10175163-10176707,10176770-10178062
          Length = 1020

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 90  GTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSNKKLSHFIENS 132
           GTGY   LV         +HGI+   FV+    ++L+ F+  +
Sbjct: 462 GTGYFYDLVARCFFQPSPSHGIDQEKFVMHDLYQELAQFVSGN 504


>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 102 IGTSGINHGIEVNSFVVDYSNKKLSHFIENSPTLDEFDFCEPKFFCGKSF 151
           + TSG  H I++   ++  +N      I + PTLD   F   +    K F
Sbjct: 247 VSTSGGFHKIDITEQILRSANPTYPASIHSEPTLDMLQFHLSQLVASKRF 296


>03_05_0981 -
           29391027-29391099,29391227-29391350,29391443-29391576,
           29391814-29391895,29391955-29392012,29392344-29392418,
           29392518-29392596,29393034-29393110,29393210-29393329
          Length = 273

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 46  VRDQAYKDLAWRNGSLHMSAPCIYSEVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTS 105
           VR  A  +  W   +    A   YS V   +E + G   L  G G G ++ LV  I+   
Sbjct: 12  VRAAAEGEPEWAGDASRRPA-AFYSAVFAQIE-EVGWERLVSGKGDGGVSCLVFRILDDQ 69

Query: 106 GINHGIEV 113
           G NH +E+
Sbjct: 70  GRNHLLEI 77


>03_01_0254 + 1983806-1984882
          Length = 358

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 59  GSLHMSAPCIYSE-VMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFV 117
           G  H  A  ++ E V + L+ K G   L+VG G G     +    G++ +  GI +N + 
Sbjct: 101 GRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVV--GITINEYQ 158

Query: 118 VD 119
           V+
Sbjct: 159 VN 160


>02_01_0001 -
           3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
           6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
           7538-7667,7753-8255
          Length = 577

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 96  TLVGLIIGTSGINHGIEVNSFVVDYSNKKLSHFIENSPTLDE 137
           T++  I G     +G      +V + NKKL+  ++N  T+DE
Sbjct: 150 TILFFIDGVPKDYNGARTKEAIVSWVNKKLAPGVQNITTVDE 191


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,447,273
Number of Sequences: 37544
Number of extensions: 169407
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 8
length of query: 151
length of database: 14,793,348
effective HSP length: 76
effective length of query: 75
effective length of database: 11,940,004
effective search space: 895500300
effective search space used: 895500300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)