GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002838-TA|BGIBMGA002838-PA|IPR000682|Protein-L-
isoaspartate(D-aspartate) O-methyltransferase
         (151 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                 201   2e-52
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                  115   2e-26
SB_45710| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.94 
SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)                      29   1.6  
SB_54730| Best HMM Match : RdRP (HMM E-Value=0)                        28   2.9  
SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_49171| Best HMM Match : CBFB_NFYA (HMM E-Value=1.7)                 27   6.6  
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    27   8.8  

>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score =  201 bits (490), Expect = 2e-52
 Identities = 88/148 (59%), Positives = 114/148 (77%)

Query: 1   MGGAVSSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGS 60
           MGGAVS+G+DNNEL++NL    YI++ +VE VFR +DR DY      + AYKDLAW+  +
Sbjct: 1   MGGAVSAGKDNNELVENLKEAGYIKTPKVEQVFREVDRCDYFPEGAEEHAYKDLAWKQKN 60

Query: 61  LHMSAPCIYSEVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDY 120
           +H+SAPCIYSEVME LEL+ GL+FLN+GSGTGYL+T+VGLIIG SG NHG+E+   VVD+
Sbjct: 61  VHLSAPCIYSEVMECLELEEGLSFLNLGSGTGYLSTMVGLIIGPSGTNHGVELFEDVVDF 120

Query: 121 SNKKLSHFIENSPTLDEFDFCEPKFFCG 148
           ++ KL HF+EN+P     +FCEP F  G
Sbjct: 121 AHSKLQHFMENNPAFKGINFCEPVFVVG 148


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score =  115 bits (276), Expect = 2e-26
 Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 2/139 (1%)

Query: 14  LIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGS-LHMSAPCIYSEV 72
           ++D  +    I S EVE+ FRA+ R  ++  E+ ++AY D   R    +HMSAP +Y+ V
Sbjct: 1   MVDKFVHTGIITSKEVEDAFRAVPRGAFVPPELYEEAYYDQPLRGDPHIHMSAPHMYAGV 60

Query: 73  MEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSNKKLSHFIENS 132
           +EAL+L  GL+FLNVGSGTGY + LVG II  + INHG+E+   +V+++ ++   F+  S
Sbjct: 61  LEALDLCPGLSFLNVGSGTGYFSCLVGYIIKRNSINHGVEIRKDLVEFACERRDEFLRFS 120

Query: 133 PTLDEFDFCEPKFFCGKSF 151
           P L   + C+P F  G  F
Sbjct: 121 PHLMR-EICQPVFLLGNCF 138


>SB_45710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 10 DNNELIDNLMRGKYIRSAEVENVFRALDRADYMSS-EVRDQAYKDL 54
          +N+E++ +    KY R    +  FR LDR D   S E R +A KDL
Sbjct: 17 NNDEVVVDKKSKKYRRIVRRKAAFRYLDRVDAKQSLEARREANKDL 62


>SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 645

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 59  GSLHMSAPCIYSEVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSF 116
           G  ++S    Y   M+A E+   ++ + + SG G +   + ++ G +G++H   V  F
Sbjct: 440 GPSYLSTVERYDPSMDAWEMMPAMSMVRINSGVGVVAGCLYIVGGHNGVSHLQSVERF 497


>SB_54730| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 658

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 92  GYLNTLVGLIIGTSGINHG 110
           GYLNT + +++  SG++HG
Sbjct: 264 GYLNTQITMLLADSGVDHG 282


>SB_57659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 77  ELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSNK 123
           E   G   L++GSG+G    ++  ++G  G   G+++    +D +NK
Sbjct: 11  ECLDGCRILDLGSGSGRDCYVLSKLVGEEGFITGVDMTPEQLDIANK 57


>SB_49171| Best HMM Match : CBFB_NFYA (HMM E-Value=1.7)
          Length = 211

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 2   GGAVSSGRDNNELIDNLMRGKYIRSAEVENVFRALDR-ADYMSSE---VRDQAYKDLAWR 57
           GGA+   RD+  ++    +G   +S + E + R+ D  A Y S +   V+D+  K   WR
Sbjct: 79  GGALHKSRDDEAMLRPRDKGALYKSRDDEAMLRSRDEGALYKSRDVGHVKDRGGKQSWWR 138

Query: 58  N 58
           +
Sbjct: 139 S 139


>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 26  SAEVENVFRALDRADYMSSEVRDQAYKDLAWRNGSLHMSAP 66
           S+E  + FRA+ +   MS    +   +D+A R   LH   P
Sbjct: 572 SSEARSAFRAVHQDVAMSEVTNEALQRDMAIRAAKLHKQPP 612


>SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 9   RDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWR 57
           +   ++I  L RGK I    + +  R  D A+ ++S  R +A+K +A R
Sbjct: 633 KHKGKIIKLLSRGKRILGLPLNSFARIEDIANILTSTHRSEAWKSVARR 681


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 24   IRSAEVENVFRALDRAD--YMSS--EVRDQAYKDLAWRNGSLHMSAPCIYSE 71
            +R A    +++  DR +  Y+S   +V  QA ++  + N  LH    C+YS+
Sbjct: 1203 VRRATASAIWKTSDRVEKTYLSPFVQVLTQAVRNPMYLNHYLHKMCSCLYSD 1254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,893,929
Number of Sequences: 59808
Number of extensions: 190196
Number of successful extensions: 391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 11
length of query: 151
length of database: 16,821,457
effective HSP length: 76
effective length of query: 75
effective length of database: 12,276,049
effective search space: 920703675
effective search space used: 920703675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)