GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002838-TA|BGIBMGA002838-PA|IPR000682|Protein-L-
isoaspartate(D-aspartate) O-methyltransferase
         (151 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    87   4e-18
U15129-1|AAB60240.1|  225|Caenorhabditis elegans protein-L-isoas...    64   5e-11
U09669-1|AAA82166.1|  225|Caenorhabditis elegans protein-L-isoas...    64   5e-11
AF022968-1|AAB69887.1|  225|Caenorhabditis elegans Protein carbo...    64   5e-11
Z80219-2|CAB02298.1|  317|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U23454-2|AAC46519.2|  368|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 87.4 bits (207), Expect = 4e-18
 Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 9/147 (6%)

Query: 6   SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMS-SEVRDQAYKDLA-------WR 57
           +S   N++LID L++   IR   +E  FR +DR+D++  SE +      L        + 
Sbjct: 3   NSESQNDDLIDFLVKNDTIRRRNIERAFRLVDRSDFLPISERKFTRLPSLTSTEPGGPFY 62

Query: 58  NGSLHMSAPCIYSEVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFV 117
            G+L + A  IY+++ + L+L+ G +FL++G+G+GYL+T+ G+++G +GINHGIE+   +
Sbjct: 63  PGALRVGAIDIYAKLFDYLDLRKGHSFLHIGTGSGYLSTIAGILLGETGINHGIELYENL 122

Query: 118 VDYSNKKLSHFIENSPTLDEFDFCEPK 144
           V YS   +  +I  +P      +  P+
Sbjct: 123 VTYSETCIDQWI-TTPEASSVGWARPE 148


>U15129-1|AAB60240.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

Query: 6   SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 64
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRA----PYEDAPQRIGYNATVS 60

Query: 65  APCIYSEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSN 122
           AP +++  ++ L+  L  G   L+VGSG+GYL   + +++G +G   GIE    +V+ S 
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSE 120

Query: 123 KKL 125
           K +
Sbjct: 121 KNI 123


>U09669-1|AAA82166.1|  225|Caenorhabditis elegans
           protein-L-isoaspartate (D-aspartate)O-methyltransferase
           protein.
          Length = 225

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

Query: 6   SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 64
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRA----PYEDAPQRIGYNATVS 60

Query: 65  APCIYSEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSN 122
           AP +++  ++ L+  L  G   L+VGSG+GYL   + +++G +G   GIE    +V+ S 
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSE 120

Query: 123 KKL 125
           K +
Sbjct: 121 KNI 123


>AF022968-1|AAB69887.1|  225|Caenorhabditis elegans Protein
           carboxymethyltransferaseprotein 1 protein.
          Length = 225

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 7/123 (5%)

Query: 6   SSGRDNNELIDNLMRGKYIRSAEVENVFRALDRADYMSSEVRDQAYKDLAWRNG-SLHMS 64
           SSG  N+ELIDNL   +   S    +  +++DR D+         Y+D   R G +  +S
Sbjct: 5   SSGSTNSELIDNLRNNRVFASQRAYDAMKSVDRGDFAPRA----PYEDAPQRIGYNATVS 60

Query: 65  APCIYSEVMEALE--LKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSN 122
           AP +++  ++ L+  L  G   L+VGSG+GYL   + +++G +G   GIE    +V+ S 
Sbjct: 61  APHMHAAALDYLQNHLVAGAKALDVGSGSGYLTVCMAMMVGRNGTVVGIEHMPQLVELSE 120

Query: 123 KKL 125
           K +
Sbjct: 121 KNI 123


>Z80219-2|CAB02298.1|  317|Caenorhabditis elegans Hypothetical
           protein T01H8.2 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 71  EVMEALELKTGLTFLNVGSGTGYLNTLVGLIIGTSGINHGIEVNSFVVDYSNKKLSHFIE 130
           E++E +  +    FL+VG G   L + V  +IG   +   IEV  ++V  + K+LS+F+E
Sbjct: 165 EILEQVGNEIDSIFLSVGGGG--LASSVAFLIGN--LRPDIEV--YLVQPAQKELSNFLE 218

Query: 131 N 131
           N
Sbjct: 219 N 219


>U23454-2|AAC46519.2|  368|Caenorhabditis elegans Hypothetical
           protein C10A4.5 protein.
          Length = 368

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 93  YLNTLVGLIIGTSGINHGIEVNSFVVDYSNKKLSHFIENSP 133
           +LN +  + I  + + HG  +N  +V Y NK+ SH   N P
Sbjct: 102 FLNFVFNVAIMRNFLKHGTGINDAIVYYLNKQ-SHVCLNVP 141


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,747,463
Number of Sequences: 27539
Number of extensions: 141640
Number of successful extensions: 288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 6
length of query: 151
length of database: 12,573,161
effective HSP length: 75
effective length of query: 76
effective length of database: 10,507,736
effective search space: 798587936
effective search space used: 798587936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)