GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002838-TA|BGIBMGA002838-PA|IPR000682|Protein-L-
isoaspartate(D-aspartate) O-methyltransferase
         (151 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.2  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 15  IDNLMRGKYIRSAEVENV 32
           IDNL + KY+R+   E++
Sbjct: 372 IDNLRKAKYLRACITESL 389


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 77  ELKTGLTFLNVGSGTGYLNTLVGLIIGT 104
           + + G+T   V S  GY+N+ V  +I T
Sbjct: 651 DCQPGVTAFIVTSWLGYMNSFVNPVIYT 678


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
          protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/10 (70%), Positives = 10/10 (100%)

Query: 12 NELIDNLMRG 21
          +EL+DNL+RG
Sbjct: 7  SELLDNLLRG 16


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,650
Number of Sequences: 429
Number of extensions: 1547
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 151
length of database: 140,377
effective HSP length: 53
effective length of query: 98
effective length of database: 117,640
effective search space: 11528720
effective search space used: 11528720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)