GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002837-TA|BGIBMGA002837-PA|IPR001680|WD-40 repeat,
IPR013915|Pre-mRNA-splicing factor 19, IPR011046|WD40-like,
IPR003613|U box
         (497 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   2.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   8.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   8.5  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   8.5  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   8.5  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 391 SFSENGYYLATAAEDSCVKLWDLRKLK 417
           S   N   L  ++E++CV + +L+KLK
Sbjct: 56  SLDGNSSDLENSSEENCVSMSNLKKLK 82


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 380 FPGHVGPVTSISFSENGYYLA---TAAEDSCVKLWDLRKLKNFKTIQLEENYAIKELC 434
           +PG      S S  +  +Y       A D   K W++         +L+E Y + ELC
Sbjct: 146 YPGAADRGGSFSDKDKFFYFVGELRRAFDKEGKNWEITMAVPIAKFRLQEGYHVPELC 203


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 180 RKRRGRTLPEGLLAPEQIRAFLTLAS 205
           R ++ + + EGL+ PE I A L+ ++
Sbjct: 305 RMKQKKRMKEGLIPPEPISASLSTSN 330


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 371 LKEQSNVANFPGHVGPVTSISFSENGYYLATAAEDSCVK 409
           ++E  N+AN+   +G    I  S  GY +     D C++
Sbjct: 217 VEELMNIANYYRILGDTVEIFNSLFGYQIILVIFDCCLE 255


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 180 RKRRGRTLPEGLLAPEQIRAFLTLAS 205
           R ++ + + EGL+ PE I A L+ ++
Sbjct: 94  RMKQKKRMKEGLIPPEPISASLSTSN 119


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 180 RKRRGRTLPEGLLAPEQIRAFLTLAS 205
           R ++ + + EGL+ PE I A L+ ++
Sbjct: 94  RMKQKKRMKEGLIPPEPISASLSTSN 119


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,376
Number of Sequences: 317
Number of extensions: 3806
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 497
length of database: 114,650
effective HSP length: 60
effective length of query: 437
effective length of database: 95,630
effective search space: 41790310
effective search space used: 41790310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)