GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002836-TA|BGIBMGA002836-PA|IPR004092|Mbt repeat,
IPR003118|Sterile alpha motif/pointed, IPR010993|Sterile alpha motif
homology
         (1364 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      29   0.22 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      29   0.22 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    27   1.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    25   2.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   2.7  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    25   2.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           25   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   3.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   6.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   6.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   6.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 511 LAPVTVAAPAILRRSN--SDNSDRKTSNANLKRRISLCTD-NMSSKNVLLNLSLQKPITK 567
           +AP T+  P + +  +   D S + + N +    +S   + N+   N+  N  L+K + K
Sbjct: 278 VAPFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCK 337

Query: 568 SEDETENN 575
           +EDET+N+
Sbjct: 338 NEDETKNH 345


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 511 LAPVTVAAPAILRRSN--SDNSDRKTSNANLKRRISLCTD-NMSSKNVLLNLSLQKPITK 567
           +AP T+  P + +  +   D S + + N +    +S   + N+   N+  N  L+K + K
Sbjct: 170 VAPFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCK 229

Query: 568 SEDETENN 575
           +EDET+N+
Sbjct: 230 NEDETKNH 237


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 567 KSEDETENNDDHRVPSLFCDEKLEKDLDTKNMGDSD 602
           + +DE +  DD  +      E+  KDLD  +M D D
Sbjct: 170 REKDEEDKRDDTDMHGRIKSERNGKDLDDDDMNDDD 205


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 1024 TPPNFYKDPDTFSWESYLAETGSSEAPPRAF 1054
            TPPN Y++   +   ++ AE  S   PP  F
Sbjct: 138  TPPNQYENFQQYDNNNFSAEENSVSEPPANF 168


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 235 STSGNPPQIIVRRPVTNNSNIHLISNVNNKPNLAPKASNQNKSSILAPVNASQPIVIQKP 294
           ST+ +PP  I+      N      SNV +   L P  S   ++++      ++P    KP
Sbjct: 129 STNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKF-TTKPST--KP 185

Query: 295 KNEKMIV 301
            N+ ++V
Sbjct: 186 TNKPVVV 192


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
            transcription factor Fushitarazu protein.
          Length = 290

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 1024 TPPNFYKDPDTFSWESYLAETGSSEAPPRAF 1054
            TPPN Y++   +   ++ AE  S   PP  F
Sbjct: 138  TPPNQYENFQQYDNNNFSAEENSVSEPPANF 168


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 1024 TPPNFYKDPDTFSWESYLAETGSSEAPPRAF 1054
            TPPN Y++   +   ++ AE  S   PP  F
Sbjct: 138  TPPNQYENFQQYDNNNFSAEENSVSEPPANF 168


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 178 TGSQVHIAPNPGIVQIPNTTNSSIQLRNSARPMPHVVYIQT 218
           T   V +   P  +   NTT + ++      P P ++++++
Sbjct: 20  TSGPVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRS 60


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
            transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 1217 RGRPPKHKRVEEVVKNDPMSDEDSIASSGCK 1247
            + R  KHKR     + D   D+DSI S G K
Sbjct: 53   QNRRMKHKRQTLGKQGDDGDDKDSITSDGGK 83


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
            ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 1217 RGRPPKHKRVEEVVKNDPMSDEDSIASSGCK 1247
            + R  KHKR     + D   D+DSI S G K
Sbjct: 1    QNRRMKHKRQTLGKQGDDGDDKDSITSDGGK 31


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
            ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 1217 RGRPPKHKRVEEVVKNDPMSDEDSIASSGCK 1247
            + R  KHKR     + D   D+DSI S G K
Sbjct: 184  QNRRMKHKRQTLGKQGDDGDDKDSITSDGGK 214


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,585
Number of Sequences: 317
Number of extensions: 14934
Number of successful extensions: 26
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 1364
length of database: 114,650
effective HSP length: 65
effective length of query: 1299
effective length of database: 94,045
effective search space: 122164455
effective search space used: 122164455
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)