GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002836-TA|BGIBMGA002836-PA|IPR004092|Mbt repeat,
IPR003118|Sterile alpha motif/pointed, IPR010993|Sterile alpha motif
homology
         (1364 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.60 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   3.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   4.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   5.6  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   5.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    25   5.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 152 TDLTVTASSQVQMPDSTGVQVKMNTTTGS--QVHIAPNPGIVQIPNTTNSSIQLRNSARP 209
           T++  T +S + +  ST +Q   N        V I P P    +P  TNS    R    P
Sbjct: 731 TNVATTVTS-MSIDQSTVIQTGANVNLWQPLSVSIPPPPSAQNVPQNTNSQAIPRIPILP 789

Query: 210 MPHVVYIQTPNGLKPVTSTDMISQASTSGNPPQ 242
           M  V  +  P  +   T    + +  +S  P Q
Sbjct: 790 MIPVYCVPVPQ-VNDSTILSPVREKLSSSQPMQ 821


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 714 GCHGMAADFITPNFCSVTCQNEVQKVLQKKRDRERTEXXXXXXXXXXXXXXXXXSDSDIP 773
           G HG+++   T + C          +L K+R                         +  P
Sbjct: 142 GLHGLSSSAPTGSSCGPGAA-AAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSP 200

Query: 774 ADGKDDKVPLKHYDSMPSTNLSESSLLKMSDEAV 807
           +  + D+V +  Y S  S     SS+   SD  V
Sbjct: 201 SVSESDEVDVIGYTSNQSDTDDHSSVQSSSDSGV 234


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 484 HREKSFTLAIPEKGKSLLNRNIIDRNDLAPVTVAAPAILRRS-NSDNSD 531
           H  + FT  IPE   +L  +  ID  ++ P+   +      S + D SD
Sbjct: 390 HNTQQFTQYIPESSSNLQEKTKIDLLEIPPIRKISDCSTTSSLSGDESD 438


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 577 DHRVPSLFCDEKLEKDLDTKNMGDSDSDEYKVKIETLKRNSEGYYEKLEEYV 628
           D+R+  L    K E D   +  GD    +  + +E +   +EG +   EE V
Sbjct: 64  DYRISCLLSIFKQEFDETERASGDLSLGQKTIDLELIGTQAEGIFGSSEECV 115


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 142 NQRQSNMDSGTDLTVTASSQVQMPDSTGV-----QVKMNTTTGSQVHIAPNPGIVQIPNT 196
           + R  +  S T  TV  S +++  D   +      +++N T   ++ +  +  +     T
Sbjct: 86  DSRDRSNASNTSKTVILSDKLESSDDISLFRGPEGIQINATELQKIKLEIHRDLPGKSTT 145

Query: 197 TNSSIQLRNSARPMPHVVYIQTPNGLKPVTSTDMISQASTSGN 239
           T + ++ R++  P   ++  +T  G KP+   + I    T  N
Sbjct: 146 TTAEVK-RDTINPEDVILIRRTGEGSKPIFEREEIKNVLTKIN 187


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 577 DHRVPSLFCDEKLEKDLDTKNMGDSDSDEYKVKIETLKRNSEGYYEKLEEYV 628
           D+R+  L    K E D   +  GD    +  + +E +   +EG +   EE V
Sbjct: 32  DYRISCLLSIFKQEFDETERASGDLSLGQKTIDLELIGTQAEGIFGSSEECV 83


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,013
Number of Sequences: 429
Number of extensions: 20004
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 6
length of query: 1364
length of database: 140,377
effective HSP length: 66
effective length of query: 1298
effective length of database: 112,063
effective search space: 145457774
effective search space used: 145457774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)