Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002835-TA|BGIBMGA002835-PA|IPR006169|GTP1/OBG subdomain,
IPR002917|GTP-binding protein, HSR1-related, IPR006073|GTP1/OBG
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 95 1e-20
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 66 8e-12
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 63 7e-11
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 58 2e-09
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 54 5e-08
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 42 1e-04
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 38 0.003
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 37 0.004
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 35 0.022
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 34 0.039
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 32 0.12
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 31 0.27
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 30 0.63
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 29 1.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 1.9
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 28 2.6
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 27 3.4
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 3.4
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 4.5
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 4.5
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 26 7.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 7.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 7.8
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 95.5 bits (227), Expect = 1e-20
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Query: 142 GHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVM-- 199
G G+ I L+LK I +IGLVG PNAGKS+LL ++ +K ++ Y FTTI P G +
Sbjct: 221 GLTGEQKLIELELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKT 280
Query: 200 VYADKR---QISIADLPGLIEGAHVNIGLGHTFLKHVERTKLLLFIADV 245
D Q +AD+PG+I+GA GLG+ FL+HVER K+L + D+
Sbjct: 281 TMPDDHSSFQYRLADIPGIIKGASDGKGLGYDFLRHVERAKMLCLVIDI 329
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 66.1 bits (154), Expect = 8e-12
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 158 ADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
A + +GFP+ GKS+LL AI++ K A+Y FTT+ GV+ Y D +I + DLPG+IE
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEY-DGAEIQMLDLPGIIE 121
Query: 218 GAHVNIGLGHTFLKHVERTKLLLFIAD 244
GA G G + L+L + D
Sbjct: 122 GASQGRG-GRQAVSAARTADLILMVLD 147
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 62.9 bits (146), Expect = 7e-11
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 157 IADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI 216
I +G +GFP+ GKS+L+ ++ + A Y FTT+ GV+ Y + +I I DLPG+I
Sbjct: 63 IGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQY-NGAKIQILDLPGII 121
Query: 217 EGAHVNIGLGHTFLKHVERTKLLLFIADV 245
EGA G G + L+ + DV
Sbjct: 122 EGAKDGRGRGKQVITVARTCNLIFIVLDV 150
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 25/113 (22%)
Query: 160 IGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGV-------------------MV 200
IG VG P++GKS++L A++ A + N+PFTTI+PN+ + +
Sbjct: 7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPI 66
Query: 201 YADKRQ------ISIADLPGLIEGAHVNIGLGHTFLKHVERTKLLLFIADVKG 247
Y + I + D+ GLI GAH GLG+ FL + L+ + DV G
Sbjct: 67 YGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVSG 119
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 53.6 bits (123), Expect = 5e-08
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 17/90 (18%)
Query: 161 GLVGFPNAGKSSLLKAISRA-KPRIANYPFTTIKPNKGVMVYADKR-------------- 205
G+VG PN GKS+ +AI+++ ANYP+ TI P + + D+R
Sbjct: 24 GIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 206 --QISIADLPGLIEGAHVNIGLGHTFLKHV 233
+++ D+ GL +GA +GLG+ FL HV
Sbjct: 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHV 113
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 41.9 bits (94), Expect = 1e-04
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 160 IGLVGFPNAGKSSLLKAISRAK-PRIANYPFTTIKP---NKGVM---------VYADK-- 204
IG+VG PN GKS+L + +++ ANYPF TI P V+ +Y K
Sbjct: 48 IGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTR 107
Query: 205 --RQISIADLPGLIEGAHVNIGLGHTFLKHVERTKLL 239
Q++I D GL + GLG+ FL ++ L
Sbjct: 108 IPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDAL 144
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 37.5 bits (83), Expect = 0.003
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 153 DLKLIADIGLVGFPNAGKSSLLKAISRAKP-RIANYPFTTIKPNKGVMVYADKRQISIAD 211
D K I+ +GL+GFPNAGKSS++ + + K +A P T K A ++I + D
Sbjct: 307 DKKQIS-VGLIGFPNAGKSSIINTLRKKKVCNVAPIPGET----KVWQYVALMKRIFLID 361
Query: 212 LPGLI 216
PG++
Sbjct: 362 CPGIV 366
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 164 GFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
G+PN GKSS + ++RA+ + Y FTT G Y R + D PG+++
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRW-QVIDTPGILD 227
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 34.7 bits (76), Expect = 0.022
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 153 DLKLIADIGLVGFPNAGKSSLLKA-ISRAKPRIANYPFTTIKPNKGVMVYADKRQISIAD 211
D K GLVG+PN GKSS + A + K +++ P T K ++S+ D
Sbjct: 297 DGKTKMTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKT----KHFQTINLSEKVSLLD 352
Query: 212 LPGLI 216
PGL+
Sbjct: 353 CPGLV 357
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 33.9 bits (74), Expect = 0.039
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 159 DIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIEG 218
++ ++G NAGKSSL+ ++ + I + T + V+V + + ++D GL +G
Sbjct: 241 NVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKG 300
Query: 219 AHVN--IGLGHTFLK-HVERTKLLLFIADVKGFQLSPKHPNRSCLETV 263
V +G K E ++L LF+ + S LET+
Sbjct: 301 EDVQEIEKIGIEIAKARAEESQLTLFVFPINYHSFSESLKQSEILETI 348
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 163 VGFPNAGKSSLLKAISRAKPR------IANYPFTTIKPNKGVMVYADKRQISIADLPGLI 216
VG PN GKSS+L ++ R + NYP T + ++ V ++ D + + D PG++
Sbjct: 151 VGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFND-MDVYMLDTPGIM 209
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 31.1 bits (67), Expect = 0.27
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 146 QTHHIRLDLKLIADIGLVGFPNAGKSSLLKAI 177
+++ + LK +G++G+PN GKSS++ A+
Sbjct: 258 KSYSAKKKLKSSLTVGVIGYPNVGKSSVINAL 289
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.9 bits (64), Expect = 0.63
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 149 HIRLDLKLIADIGLVGFPNAGKSSLLKAI 177
H+ +D+++ + IG+VG AGKS++LK +
Sbjct: 536 HVDIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 29.1 bits (62), Expect = 1.1
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 145 GQTHHIRLDLKLIADIG--LVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYA 202
G T + +++ DI L G P KS LLK IS+ PR +TT + + GV + A
Sbjct: 382 GVTKELGDGMRIRGDINICLTGDPGVAKSQLLKYISKVAPRGV---YTTGRGSSGVGLTA 438
Query: 203 DKRQISIADLPGLIEGAHV 221
+ + D L GA V
Sbjct: 439 AVMRDPVTDEMVLEGGALV 457
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 148 HHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPR----IANYPFTTIKPN 195
+++ L ++ + +VG +GKS+L++ + + P I YP T I N
Sbjct: 1119 NNVSLSIEAREKVAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLTNIDTN 1170
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 149 HIRLDLKLIADIGLVGFPNAGKSSLLKAIS 178
H+ LDL + LVG AGKS+LLK +S
Sbjct: 22 HVTLDLPKGSRTLLVGANGAGKSTLLKLLS 51
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 198 VMVYADKRQISIADLPGLIEGAHVN 222
+M+Y DK +S + + GL E H+N
Sbjct: 98 MMLYIDKATLSYSSILGLFEDTHIN 122
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 154 LKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADL 212
L+L I L G+P GK+ L AIS P F +IK + + Y K + + DL
Sbjct: 637 LRLPTGILLFGYPGCGKTYLASAISSTFP----VQFISIKGPELLDKYIGKSEQGVRDL 691
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 160 IGLVGFPNAGKSSLLKAIS-RAKPRIANY 187
+GLVG GKS+ LK +S + KP + Y
Sbjct: 106 LGLVGTNGIGKSTALKILSGKMKPNLGRY 134
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 147 THHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPF 189
TH RL KL + L G P GK+ L +A++ AN PF
Sbjct: 290 THFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE----ANVPF 328
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 7.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 77 TAGHGEDSRKTKIIGTPGEDIKLEVPLGVTVYREDGTVLGSIDKEDQTVIIARGGPGG 134
TA D + + G D+ ++V +Y E GT +G+++ ++AR GG
Sbjct: 103 TANIKIDRASSSVSGDDDLDVTIQVKEKPRLYVETGTDVGNVEGNVHANVLARNVFGG 160
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 160 IGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLP 213
+ ++G P GKS+L+K++ R R + Y + I +V KR+I+ + P
Sbjct: 77 VAVMGPPGTGKSTLIKSLVR---RYSKYTISQI-TGPITVVAGKKRRITFLECP 126
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 149 HIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYP 188
H L L G+VG GKS+LL+AI K + N+P
Sbjct: 462 HTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYK--VENFP 499
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,663
Number of Sequences: 5004
Number of extensions: 57878
Number of successful extensions: 141
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 28
length of query: 386
length of database: 2,362,478
effective HSP length: 74
effective length of query: 312
effective length of database: 1,992,182
effective search space: 621560784
effective search space used: 621560784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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