Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002835-TA|BGIBMGA002835-PA|IPR006169|GTP1/OBG subdomain,
IPR002917|GTP-binding protein, HSR1-related, IPR006073|GTP1/OBG
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 142 4e-34
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 140 2e-33
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 121 9e-28
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 64 1e-10
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 63 4e-10
08_01_0664 + 5741111-5741113,5741491-5741658,5741741-5741864,574... 54 2e-07
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 51 2e-06
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 43 4e-04
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 42 8e-04
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 38 0.014
07_01_0075 - 558829-560859 38 0.018
06_01_0668 - 4882174-4884204 38 0.018
11_06_0250 + 21701741-21701826,21702094-21702246,21703060-217031... 35 0.13
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 34 0.22
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 32 0.68
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 32 0.89
09_01_0113 + 1751204-1751507,1751791-1752039,1753136-1753398,175... 31 1.2
04_04_0171 - 23282840-23283036,23283360-23283660,23283747-232840... 30 2.7
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 30 2.7
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 30 3.6
01_06_0603 + 30530486-30530984,30531174-30531202,30531484-305316... 30 3.6
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 29 6.3
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 29 6.3
01_06_1614 - 38648495-38649706 29 6.3
02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772... 29 8.3
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 29 8.3
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 142 bits (344), Expect = 4e-34
Identities = 93/239 (38%), Positives = 125/239 (52%), Gaps = 22/239 (9%)
Query: 78 AGHGEDSRKTKIIGTPGEDIKLEVPLGVTVYREDGTV-LGSIDKEDQTVIIARGGPGG-- 134
AG G + + G G+D+ ++VP G V G V L + + Q ++ GG GG
Sbjct: 360 AGRGAHGQGRQQAGAKGDDVVVKVPPGTVVRSAAGDVELLELMRPGQRALLLPGGRGGRG 419
Query: 135 ----------TPQNNFLGHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRI 184
P+ G G I L+LKL+AD+G+VG PNAGKS+LL AIS AKP I
Sbjct: 420 NAAFKSGTNKAPRIAEKGEKGPEMWIDLELKLVADVGIVGAPNAGKSTLLTAISAAKPTI 479
Query: 185 ANYPFTTIKPNKGVMVYADKRQISIADLPGLIEGAHVNIGLGHTFLKHVERTKLLLFIAD 244
ANYPFTT+ PN GV+ + +ADLPGL+EGAH GLGH FL+H ER +L+ + D
Sbjct: 480 ANYPFTTLLPNLGVVSLDFDATMVVADLPGLLEGAHRGYGLGHEFLRHSERCSVLVHVVD 539
Query: 245 VKGFQLSPKHPNRSCLETVXXXXXXXXXXXXXXXXXPAILAINKMDLPGSEETLHRIKE 303
G Q P++ E V P I+ NKMDLP + E ++ +E
Sbjct: 540 GSGEQ--PEYE----FEAV---RLELELFSPSLVDKPYIVVYNKMDLPEASERWNKFQE 589
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 140 bits (339), Expect = 2e-33
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 2/162 (1%)
Query: 142 GHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVY 201
GH G ++ L+LK IAD+GLVG PNAGKS+LL A+SRA+P IA+Y FTT++PN G + Y
Sbjct: 324 GHPGTETYLILELKSIADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTY 383
Query: 202 ADKRQISIADLPGLIEGAHVNIGLGHTFLKHVERTKLLLFIADVKGFQLSPKHPNRSCLE 261
D + +AD+PGLI+GAH N GLGH FL+H+ERTK+L ++ D+ K E
Sbjct: 384 EDYFSVKVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVLDLAATLNGRK--GVPPWE 441
Query: 262 TVXXXXXXXXXXXXXXXXXPAILAINKMDLPGSEETLHRIKE 303
+ P+++ NK+D G++E +K+
Sbjct: 442 QLRDLVVELEHYQEGLTKRPSLIVANKIDEEGADEMYEELKK 483
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 121 bits (292), Expect = 9e-28
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 32/186 (17%)
Query: 91 GTPGEDIKLEVPLGVTVYREDGTVLGSIDKEDQTVIIARGGPGG-----TPQN------- 138
G GE +++ VP+G V R+ G VL + VI+ARGG GG P+
Sbjct: 185 GFAGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRRKAMV 244
Query: 139 ---NFL----------GHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIA 185
N + G G+ + L L+++AD+GLVG PNAGKS+LL AI+ A+P IA
Sbjct: 245 LSPNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIA 304
Query: 186 NYPFTTIKPNKGVM-------VYADKRQISIADLPGLIEGAHVNIGLGHTFLKHVERTKL 238
+YPFTT+ PN G + + ++ADLPGLIEGAH+ GLG FL+H+ RT++
Sbjct: 305 DYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRV 364
Query: 239 LLFIAD 244
++ + D
Sbjct: 365 IVHVVD 370
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 64.5 bits (150), Expect = 1e-10
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 158 ADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
A +GLVGFP+ GKS+LL ++ +A Y FTT+ GV++Y + I + DLPG+IE
Sbjct: 76 ARVGLVGFPSVGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAK-IQLLDLPGIIE 134
Query: 218 GAHVNIGLGHTFLKHVERTKLLLFIAD 244
GA G G + ++L + D
Sbjct: 135 GAKDGKGRGRQVISTARTCNVILIVLD 161
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 62.9 bits (146), Expect = 4e-10
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 160 IGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIEGA 219
+ L+GFP+ GKS+LL ++ A+Y FTT+ G++ Y D + I + DLPG+IEGA
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYNDTK-IQLLDLPGIIEGA 123
Query: 220 HVNIGLGHTFLKHVERTKLLLFIAD 244
G G + + + L+L + D
Sbjct: 124 SEGKGRGRQVIAVAKSSDLVLMVLD 148
>08_01_0664 +
5741111-5741113,5741491-5741658,5741741-5741864,
5742078-5742169,5742254-5742352,5742476-5742589,
5743190-5743254,5743342-5743467,5743870-5743945,
5744502-5744594,5744944-5744994,5745084-5745182
Length = 369
Score = 54.0 bits (124), Expect = 2e-07
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 162 LVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKG------------VMVYADKRQIS- 208
+VG PN GKS+ +++ N+PF TI PN+ +Y K ++S
Sbjct: 1 MVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSA 60
Query: 209 ---IADLPGLIEGAHVNIGLGHTFLKHV 233
I D+ GL+ GAH GLG+ FL H+
Sbjct: 61 YLEINDIAGLVRGAHAGEGLGNAFLSHI 88
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 50.8 bits (116), Expect = 2e-06
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 157 IADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI 216
I + LVG PN GKSSL++ +S KP + +YPFTT G +V ++ + + D PGL+
Sbjct: 244 IPTLCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGILMGHIV-SNHERFQVTDTPGLL 302
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 43.2 bits (97), Expect = 4e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 153 DLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADL 212
+LKL +G+VG PN GKSSL+ ++ R+ R+ N T V DK+ + + D
Sbjct: 264 ELKLAITVGIVGLPNVGKSSLINSLKRS--RVVNVGSTPGVTRSMQEVQLDKK-VKLLDC 320
Query: 213 PGLIEGAHVNIGL 225
PG++ N G+
Sbjct: 321 PGVVMLKSSNSGV 333
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 41.9 bits (94), Expect = 8e-04
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 177 ISRAKPRIANYPFTTIKPNKGVMVYADKR----------------QISIADLPGLIEGAH 220
+ K + AN+PF TI PN GV+ D R I + D+ GL++GA
Sbjct: 133 VENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGAS 192
Query: 221 VNIGLGHTFLKHVERTKLLL 240
GLG+ FL ++ +L
Sbjct: 193 KGEGLGNQFLSNIREVDSIL 212
Score = 34.3 bits (75), Expect = 0.17
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 144 FGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTI 192
F + R+ + L A G+VG PN GKS+L AI R P ++ F +
Sbjct: 49 FASGRNARISMSLRA--GIVGLPNVGKSTLFNAIVRNLPSASSEEFRAV 95
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 37.9 bits (84), Expect = 0.014
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 150 IRLDLKLIADIGLVGFPNAGKSSLLKAISRAK-PRIANYPFTTIKPNKGVMVYADKRQIS 208
+R + ++ +G+VG PNAGKSSL + K ++ TT GV+ QI
Sbjct: 141 VREEDQMSLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLT-KGITQIC 199
Query: 209 IADLPGLIEGAHVNIGLGH 227
D PGL+ G H GL H
Sbjct: 200 FFDTPGLMLGHH---GLPH 215
>07_01_0075 - 558829-560859
Length = 676
Score = 37.5 bits (83), Expect = 0.018
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 162 LVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI----E 217
+ G+PN GKSS + I+RA + Y FTT G Y R + D PG++ E
Sbjct: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLR-YQVIDTPGILDRPFE 231
Query: 218 GAHVNIGLGHTFLKHVERTKLLLFIADVKG 247
++ T L H+ +LF D+ G
Sbjct: 232 DRNIIEMCSITALAHLRAA--VLFFLDISG 259
>06_01_0668 - 4882174-4884204
Length = 676
Score = 37.5 bits (83), Expect = 0.018
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 162 LVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI----E 217
+ G+PN GKSS + I+RA + Y FTT G Y R + D PG++ E
Sbjct: 173 ICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLR-YQVIDTPGILDRPFE 231
Query: 218 GAHVNIGLGHTFLKHVERTKLLLFIADVKG 247
++ T L H+ +LF D+ G
Sbjct: 232 DRNIIEMCSITALAHLRAA--VLFFLDISG 259
>11_06_0250 +
21701741-21701826,21702094-21702246,21703060-21703176,
21703288-21703402,21703604-21703624,21703710-21703757,
21704156-21704293,21704789-21704884,21704971-21705084,
21705364-21705432,21705613-21705683,21705785-21705878,
21706202-21706327,21706425-21706514,21706651-21706749
Length = 478
Score = 34.7 bits (76), Expect = 0.13
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 160 IGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIEG- 218
+ LVG+ NAGKS+LL ++ A + F T+ P ++ + + + D G I+
Sbjct: 256 VSLVGYTNAGKSTLLNRLTGADVLAEDKLFATLDPTTRRVLMKNGTEFLLTDTVGFIQKL 315
Query: 219 AHVNIGLGHTFLKHVERTKLLLFIADV 245
+ + L+ + + +++ + D+
Sbjct: 316 PTMLVAAFRATLEEISESSVIVHLVDI 342
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 33.9 bits (74), Expect = 0.22
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 160 IGLVGFPNAGKSSLLKA-ISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI 216
+G VG+PN GKSS + A + K + + P T K ++++ D PGL+
Sbjct: 316 VGFVGYPNVGKSSTINALVGEKKTGVTHTPGKT----KHFQTLIISEELTLCDCPGLV 369
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 32.3 bits (70), Expect = 0.68
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 160 IGLVGFPNAGKSSLLKA-ISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI 216
+G VG+PN GKSS + A + + + + + P T K ++ + D PGL+
Sbjct: 333 VGFVGYPNVGKSSTINALVGQKRTGVTSTPGKT----KHFQTLVISEELILCDCPGLV 386
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 31.9 bits (69), Expect = 0.89
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 137 QNNFLGHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAI-SRAKPRIANYPFTTIKPN 195
+ + L Q ++ D + I+ +G VG+PN GKSS++ + S++ ++A P T
Sbjct: 297 KGSLLSVLRQFARLKSDKQAIS-VGFVGYPNVGKSSVINTLRSKSVCKVAPIPGET---- 351
Query: 196 KGVMVYADKRQISIADLPGLI 216
K ++I + D PG++
Sbjct: 352 KVWQYITLTKRIFLIDCPGVV 372
>09_01_0113 +
1751204-1751507,1751791-1752039,1753136-1753398,
1755192-1755357,1755445-1755534,1756376-1756674,
1757022-1757231
Length = 526
Score = 31.5 bits (68), Expect = 1.2
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 84 SRKTKIIGTPGEDIKLEVPLGVTV-YREDGTVLGSIDKEDQTVIIARGGPGGTPQNNFLG 142
++K + G P ++ EV L + +R +LG DK + +II P GT + + G
Sbjct: 270 AKKDQFAG-PRDEFSNEVELLAKIDHRNLVRLLGFTDKGHERIIITEYVPNGTLREHLDG 328
Query: 143 HFGQTHHIRLDLKLIADI 160
+G+T L++ D+
Sbjct: 329 QYGRTLDFNQRLEIAIDV 346
>04_04_0171 -
23282840-23283036,23283360-23283660,23283747-23284070,
23284678-23284698,23284877-23285788
Length = 584
Score = 30.3 bits (65), Expect = 2.7
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 145 GQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADK 204
G ++ +L KL + LVG P GK+ L +A++ A PF ++ ++ V V+ +
Sbjct: 318 GSLNYKKLGAKLPRGVLLVGPPGTGKTLLARAVAGE----AGIPFFSVSASEFVEVFVGR 373
Query: 205 RQISIADL 212
+ DL
Sbjct: 374 GAARVRDL 381
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 30.3 bits (65), Expect = 2.7
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 157 IADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPN-KGVMV---YADK------RQ 206
+ + +VG+ NAGKS+L+ A+S + F T+ P + V++ Y ++ R+
Sbjct: 287 LVTVAVVGYTNAGKSTLVSALSETDLYSDDRLFATVDPRLRSVILPSGYLNRFFIHLLRK 346
Query: 207 ISIADLPGLIEGAHVN-IGLGHTFLKHVERTKLLLFIAD 244
++D G I V + H L+ V +L+ + D
Sbjct: 347 ALLSDTVGFISDLPVQLVEAFHATLEEVVEADMLVHVLD 385
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 29.9 bits (64), Expect = 3.6
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 149 HIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGV---MVYAD-- 203
H+R ++ VG N GKS+LL AI+R I P T P G ++ D
Sbjct: 225 HVRQLAGSRGNVWAVGARNVGKSTLLNAIARCS-GIEGGPTLTEAPVPGTTLDVIQVDGV 283
Query: 204 -KRQISIADLPGLIEG 218
Q + D PGL+ G
Sbjct: 284 LGSQAKLFDTPGLLHG 299
>01_06_0603 +
30530486-30530984,30531174-30531202,30531484-30531660,
30533662-30533745,30534059-30534277
Length = 335
Score = 29.9 bits (64), Expect = 3.6
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 93 PGEDIKLEVPLGVTVYREDGTVLGSIDKEDQTVIIARG-----GPGGTPQNNFLGHFGQT 147
P D+++++PL ++ G + + D E T + +G GP N +
Sbjct: 62 PQGDVQVQLPLD-RLFVPPGASVSAGDAEAVTARVLKGSNIVLGPYARGDANVIAADFVK 120
Query: 148 HHIRLD---LKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNK 196
+R D + + LVG N GKSSLL ++ R K R+A T+ KP K
Sbjct: 121 SSVRPDDCPRDGLPEFALVGRSNVGKSSLLNSLVRRK-RLA---LTSKKPGK 168
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 160 IGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
+ ++G PN GKSSLL A S+++ I T + V I++ D G+ E
Sbjct: 308 VAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLLDTAGIRE 365
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 29.1 bits (62), Expect = 6.3
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 161 GLVGFPNAGKSSLL-KAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI 216
G+VG+PN GKSSL+ + + R A P T + K V +D + + D PG++
Sbjct: 404 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RELKWVRFGSD---LELLDSPGIL 456
>01_06_1614 - 38648495-38649706
Length = 403
Score = 29.1 bits (62), Expect = 6.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 112 GTVLGSIDKEDQTVIIARGGPGGTPQNN 139
G V G I++E Q A+GG G P+ N
Sbjct: 264 GHVAGHINREKQAAAAAQGGSGARPEGN 291
>02_05_0136 +
26174965-26175849,26176965-26177030,26177124-26177258,
26177369-26177434,26177516-26177701,26177777-26177863,
26177985-26178098,26178174-26178298,26178375-26178483,
26179298-26179423,26179511-26179831,26180146-26180269,
26180405-26180529
Length = 822
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 149 HIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQIS 208
+IRL + + LVG P GK+ L KA++ A PF + ++ V +Y
Sbjct: 371 YIRLGARPPRGVLLVGLPGTGKTLLAKAVAGE----AEVPFISCSASEFVELYVGMGAAR 426
Query: 209 IADL 212
+ DL
Sbjct: 427 VRDL 430
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 28.7 bits (61), Expect = 8.3
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 155 KLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPG 214
KL + +VG PN GKS+LL + + + + + + D R + + D G
Sbjct: 309 KLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRTVYLVDTAG 368
Query: 215 LIE 217
+E
Sbjct: 369 WME 371
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.139 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,823,265
Number of Sequences: 37544
Number of extensions: 383360
Number of successful extensions: 795
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 38
length of query: 386
length of database: 14,793,348
effective HSP length: 83
effective length of query: 303
effective length of database: 11,677,196
effective search space: 3538190388
effective search space used: 3538190388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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