GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002835-TA|BGIBMGA002835-PA|IPR006169|GTP1/OBG subdomain,
IPR002917|GTP-binding protein, HSR1-related, IPR006073|GTP1/OBG
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               65   8e-11
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)                   62   1e-09
SB_50712| Best HMM Match : MMR_HSR1 (HMM E-Value=3.5)                  59   5e-09
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)                   56   4e-08
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)                   46   4e-05
SB_56503| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.005
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.008
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)              38   0.010
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.018
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.17 
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)              32   0.69 
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)                    30   3.7  
SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)                30   3.7  
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   6.4  
SB_37542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.5  
SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.5  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.5  

>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 31/51 (60%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 163 VGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLP 213
           VGFPNAGKS+LL+AISRA P +A YPFTT+ P+ G++ Y D  Q  IA++P
Sbjct: 1   VGFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEYDDFSQ--IAEIP 49



 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 207 ISIADLPGLIEGAHVNIGLGHTFLKHVERTKLLLFIADV 245
           I +AD+PGLI  AH+N GLGHTFL+H+ER   LL++ D+
Sbjct: 134 IVVADIPGLIPDAHLNKGLGHTFLRHIERCCSLLYVLDI 172


>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
          Length = 365

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 158 ADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
           A + L+GFP+ GKS+LL  +++ +   A+Y FTT+    GV+ Y +   I + DLPG+IE
Sbjct: 64  ARVALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINY-NGANIQLLDLPGIIE 122

Query: 218 GAHVNIGLGHTFLKHVERTKLLLFIADVKGFQLSPK 253
           GA    G G   +       L+L + D    ++  K
Sbjct: 123 GAAQGKGRGRQVIAVARTADLVLMMLDASKGEIQKK 158


>SB_50712| Best HMM Match : MMR_HSR1 (HMM E-Value=3.5)
          Length = 94

 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 202 ADKRQISIADLPGLIEGAHVNIGLGHTFLKHVERTKLLLFI 242
           AD   IS+ADLPGL+EGAH+N G+ H FLKHVE T+LL  +
Sbjct: 54  ADTPYISVADLPGLVEGAHLNRGMVHKFLKHVEGTRLLALV 94


>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
          Length = 303

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 158 ADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
           A IG VGFP+ GKS+LL  ++     +A Y FTT+    GV+ Y   + I + DLPG+IE
Sbjct: 49  ARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAK-IQLLDLPGIIE 107

Query: 218 GA 219
           GA
Sbjct: 108 GA 109


>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
          Length = 534

 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 160 IGLVGFPNAGKSSLLKAISRA-KPRIANYPFTTIKPNKGVMVYA 202
           IGL+G P+AGKS+   A ++  + R+A++PFTTI+PN G   YA
Sbjct: 155 IGLIGKPSAGKSTFFNAATQQNRARVASHPFTTIEPNIGRGFYA 198


>SB_56503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 13/84 (15%)

Query: 91  GTPGEDIKLEVPLGVTVYREDGTVLGSIDKEDQTVIIARGGPGG------------TPQN 138
           G    D+ ++VPLG T+   +  V+  I +E ++ +IA+GG GG             P+ 
Sbjct: 25  GKNASDLIVKVPLG-TIATHNKEVIADISEEGESCVIAQGGEGGLGNATFKTATDQAPEK 83

Query: 139 NFLGHFGQTHHIRLDLKLIADIGL 162
           +  G  GQ   I L+LK IAD+GL
Sbjct: 84  SSQGTPGQERVIELELKTIADVGL 107


>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 164 GFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 217
           GFPN GKSS +  ++RA   +  Y FTT     G M Y   R   + D PG+++
Sbjct: 90  GFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMDYKYLRW-QVVDTPGVLD 142


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 153 DLKLIADIGLVGFPNAGKSSLLKAISRAKP-RIANYPFTTIKPNKGVMVYADKRQISIAD 211
           D+K    +G+VGFPN GKSS++ ++ R++   +   P  T    +   V  DK  I + D
Sbjct: 451 DIKTSITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQE---VQLDK-HIKLLD 506

Query: 212 LPGLI 216
            PG++
Sbjct: 507 SPGIV 511


>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
          Length = 141

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 158 ADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTI 192
           A + L+GFP+ GKS+LL  +++ +   A+Y FTT+
Sbjct: 64  ARVALIGFPSVGKSTLLTKLTQTQSACASYEFTTL 98


>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 37.5 bits (83), Expect = 0.018
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 153 DLKLIADIGLVGFPNAGKSSLLKAISRAK-PRIANYPFTTIKPNKGVMVYADKRQISIAD 211
           D KL+  + ++G PN+GKS+L+  +   K   +   P TT + ++GV   +   QI + D
Sbjct: 36  DTKLLK-VAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFT-SGGTQIILLD 93

Query: 212 LPGLI 216
            PGL+
Sbjct: 94  TPGLV 98


>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 139 NFLGHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGV 198
           N L  F + H    D K I+ +GL+G+PN GKSS++  + +AK      P   I     V
Sbjct: 153 NLLRQFSKLHS---DKKQIS-VGLIGYPNVGKSSIINTL-KAKKVCKVAP---IAGETKV 204

Query: 199 MVYAD-KRQISIADLPGLI 216
             Y    R+I + D PG++
Sbjct: 205 WQYITLMRRIYLVDCPGVV 223


>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
          Length = 299

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 157 IADIGLVGFPNAGKSSLLKAISRAK 181
           +  IGLVG+PN GKSS +  I ++K
Sbjct: 160 LTTIGLVGYPNVGKSSTINTILQSK 184


>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
          Length = 957

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 74  KTITAGHGEDSRKTKIIGTPGEDIKLEVPLGVTVYREDGTVLGSIDKEDQTVIIARGGPG 133
           KTIT GH  ++R T +I     D +L+V    T+  ED  ++G+      +   A GG  
Sbjct: 145 KTITPGHDTNARNTPLI-----DDRLDVEEEDTLLEEDAEMIGNNPAITGSRGAAYGGES 199

Query: 134 GTPQNNFLGHFGQTHHIRLDL 154
              Q+ F  H  Q  + ++ L
Sbjct: 200 ELLQSQFQLHTTQQKYNQIVL 220


>SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)
          Length = 227

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 161 GLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIEGAH 220
           G+   P   +  +   + R      N+P TT KP +  +   D +       P L +G H
Sbjct: 65  GVRSSPATSRPFVSPVLKRPSQTQGNHP-TTKKPRQETITGHDDKNEKELQKPDLEDGNH 123

Query: 221 VNIGLGHTFLKHVERT 236
           VN+ L  + L H   T
Sbjct: 124 VNVTLTRSGLWHSPET 139


>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 148 HHIRLDLKLIADIGLVGFPNAGKSSLLKAISR 179
           H++ +D+K    +G+ G   AGKSSL+ A+ R
Sbjct: 250 HNLNIDIKGGERVGVAGRTGAGKSSLVAALFR 281


>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 618

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 148 HHIRLDLKLIADIGLVGFPNAGKSSLLKAISR-AKPR 183
           H++   +K    +G+VG   AGKSSLL  + R A+P+
Sbjct: 53  HNVTCVIKPSEKVGVVGRTGAGKSSLLSTLFRLAEPK 89


>SB_37542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 110 EDGTVLGSIDKEDQTVIIARGGPGG-TPQNNFLGHFGQTHHIRL 152
           ED  +LGS  +    V++ARG PGG   + NF   F     +RL
Sbjct: 270 EDNFILGSNTRNVLRVMVARGKPGGRAVERNFERRFYFPVRLRL 313


>SB_4089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 180 AKPRIANYPFTTIKP--NKGVMVYADKRQISIADLPGLIEGAHVNIGL-GHTFLK-HVE 234
           AK R  N   T  KP  N+G  VY D+ +++IAD+  L +     + + G  F+K HV+
Sbjct: 14  AKRRSVNSSKTLKKPGQNRGRKVYDDRTELNIADVATLRDTCTFRMAIQGPEFVKLHVQ 72


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 98   KLEVPLGVTVYREDGTVLGSIDKEDQTVIIARGGPGGTPQ 137
            +LE     TVY    TV+G  DK ++ VII    P   P+
Sbjct: 1615 RLEPGTSYTVYVTGSTVVGEGDKSEKIVIITASQPPPAPK 1654


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,245
Number of Sequences: 59808
Number of extensions: 425491
Number of successful extensions: 807
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 20
length of query: 386
length of database: 16,821,457
effective HSP length: 83
effective length of query: 303
effective length of database: 11,857,393
effective search space: 3592790079
effective search space used: 3592790079
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)