GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002834-TA|BGIBMGA002834-PA|undefined
         (1073 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   2.0  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           26   4.6  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    25   8.0  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 74  QLERQLEDVRNAKQNFKEDTVSVTTARSTKSAKDNGNENKRRNTKEDIKNVNGEIVE 130
           + E+ LE+ R   Q  +E      T   T   K   N N+ R   + ++ V G++ E
Sbjct: 517 ETEKDLEEKRARLQTLEEALPVTRTELETAKQKLQENANEERELTQTLRAVQGKLQE 573


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 707 NRNINTDTSESNAVSTTVHDDSVGRNSKLSTIHS 740
           N N+N D SE+   S   +  S GR+S+ S+  S
Sbjct: 878 NLNLNLDRSEAGGRSLCTNGSSSGRDSQPSSARS 911


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 113 KRRNTKED--IKNVNGEIVEVKDKLRKS--SKGENNAKDSNLPPNATSVHTAFCRQKFSR 168
           +RRN +E   +K VN     ++  +  +  +   N A+ +N     + V T     ++ R
Sbjct: 104 QRRNARERNRVKQVNNGFANLRQHIPSTVVTALTNGARGAN--KKLSKVDTLRLAVEYIR 161

Query: 169 -LHGTTDSTGSELPEDSLTSRFNGSSSFQKYSTAS 202
            L    D  G ELP +    +   +SS  + S +S
Sbjct: 162 SLQRMLDENGGELPSNKQQQQLTSASSSNQLSNSS 196


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,086,998
Number of Sequences: 2123
Number of extensions: 47484
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 4
length of query: 1073
length of database: 516,269
effective HSP length: 71
effective length of query: 1002
effective length of database: 365,536
effective search space: 366267072
effective search space used: 366267072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)