GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002833-TA|BGIBMGA002833-PA|undefined
         (1007 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.48 
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       24   6.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   6.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    24   6.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   6.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 579 CYPILPVCPMNCIQNGYVVPSPSYTCANCTKDEKSKISNSKVCSSETEELIKE 631
           C   +PV PM   Q+  + P P  T  + T    S  +++K  SS+   LIKE
Sbjct: 403 CGVNVPVPPM---QSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKE 452


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 230 ESLHERKEKGHHRQKIMNNNRDLDNEFIADIIRRQYKPVKL 270
           ++  ER+E+  H+Q+     + ++ +  + I +  + P+K+
Sbjct: 74  QARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKM 114


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 728 FTMESMSTEKGKRNKFAKVLRSFGLF 753
           FT+++ ST   K  K+ KVL +F  F
Sbjct: 7   FTIDTRSTHSMKNFKYLKVLVTFAHF 32


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 230 ESLHERKEKGHHRQKIMNNNRDLDNEFIADIIRRQYKPVKL 270
           ++  ER+E+  H+Q+     + ++ +  + I +  + P+K+
Sbjct: 225 QARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKM 265


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 230 ESLHERKEKGHHRQKIMNNNRDLDNEFIADIIRRQYKPVKL 270
           ++  ER+E+  H+Q+     + ++ +  + I +  + P+K+
Sbjct: 284 QARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKM 324


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.128    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,421
Number of Sequences: 317
Number of extensions: 9326
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 1007
length of database: 114,650
effective HSP length: 64
effective length of query: 943
effective length of database: 94,362
effective search space: 88983366
effective search space used: 88983366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)