Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002833-TA|BGIBMGA002833-PA|undefined
(1007 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0149 - 22733703-22736216 33 0.87
05_07_0295 - 29051375-29052135,29053368-29053533 33 1.2
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 33 1.2
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 31 3.5
02_01_0402 - 2934074-2937217 31 4.6
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 31 6.1
10_08_0460 - 18098187-18098248,18098331-18098399,18098468-180994... 30 8.1
>05_05_0149 - 22733703-22736216
Length = 837
Score = 33.5 bits (73), Expect = 0.87
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 56 GIQNQLNEATRHCQDIS-YLENISKPS-SNVTELKQVPSSSKHQIEQSVQGQYNESEAKV 113
G QN E C +++ ++E + +P N + SS + + V QY + +
Sbjct: 393 GTQNIHKEMNAACSELAEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSD 452
Query: 114 LYKTSENNFPSSDPSDQTPKSQDHDDNN 141
S+N D + P Q H D N
Sbjct: 453 SIDGSKNEVEKQDKGSEGPLVQQHPDTN 480
>05_07_0295 - 29051375-29052135,29053368-29053533
Length = 308
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 464 SGTLNSRPNTYIEDQTCHETHLNKTQDTDMSTDKTDRALCEIKDILQ--SFLQEIKKEAT 521
+G N ++ ++D H + K + + R +C++K++++ FL + KE
Sbjct: 227 NGHANGYADSSVDDPELHYIGIEKRKGEVEKVEMLKREVCDLKEVIEGKDFLIQSYKEQK 286
Query: 522 VSQCEK-SDVTSKAAGNVPN 540
+ C K ++ K + VPN
Sbjct: 287 LELCGKIRELQEKLSAQVPN 306
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 33.1 bits (72), Expect = 1.2
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 329 DTRLYSSNKAKIKTRRRYMEAQNDSELYDLIPVKEKSSPKSRRKFAEDNIRYHYYKEVPP 388
D Y S ++ +R+++ + + D+ K K K E R+H +++
Sbjct: 726 DEENYDSEESYKHSRKKHRSEDSRAHTSDV----HKHKLKRHSKDLEP--RHHRHRDSSS 779
Query: 389 SPRTHRPQLNLKAQHYEDYFYHHQRKSRSPNRHERN 424
+ +H +DY YH + RS +RH+R+
Sbjct: 780 EDEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRHQRD 815
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 31.5 bits (68), Expect = 3.5
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 277 DFSQLSAPVCRDQEYSYNNYFGDCSELCSCCYDSNRSKYKRHIDLSDMRSICDTRLYSSN 336
D +L + +C + Y + G CS+L ++ K +H++LSD S+ L+SS
Sbjct: 556 DLVELPSYICEFLKLQYLDLHG-CSKLKKLPDGIHKHKELQHLNLSDCTSLESLPLFSSQ 614
Query: 337 KAKIKTRRRYMEAQNDSELYDLIPVKEK 364
++ + ++ + S+L L ++EK
Sbjct: 615 SGGLQ-KLSFLNVSHCSQLVKLSFLEEK 641
>02_01_0402 - 2934074-2937217
Length = 1047
Score = 31.1 bits (67), Expect = 4.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 46 NVTDLRHRLGGIQNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKH 96
N+T LR + QL+E + + +S+L + +N+T Q+ SSK+
Sbjct: 373 NLTALRLSFNNFRGQLSEKIGNLKSLSFLSLVKNSLANITSTLQMLQSSKN 423
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 30.7 bits (66), Expect = 6.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 66 RHCQDISYLENISKPSS-NVTELKQVPSSSKHQIEQSVQGQYNESEAKVLYKTSENNFPS 124
R CQ S N S SS N + ++P KH + + V+G + ++ ++ + PS
Sbjct: 2107 RLCQPPSKFSNESNASSVNPSVSAKIPEKMKHLLLKGVRGITGDVSSEPCEDNNDMSEPS 2166
Query: 125 SDPSDQTPKSQDHDDNN 141
+ +T S D D++
Sbjct: 2167 QNTLSETQGSSDAADSS 2183
>10_08_0460 - 18098187-18098248,18098331-18098399,18098468-18099434,
18100089-18100808,18100942-18101031,18101076-18101138,
18101223-18101366,18101471-18101527,18101606-18101680,
18101757-18101836,18101937-18102050,18102166-18102258,
18102470-18102553,18102812-18102859,18105207-18105337,
18105903-18106135
Length = 1009
Score = 30.3 bits (65), Expect = 8.1
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 414 KSRSPNRHERNVKEIFESDLSSETPQAIESGRRQMKTTNMANAPEHPRNESGTLNSRPNT 473
K R P R+ R V+++ E+ + + R + TN+ N E + T + N
Sbjct: 935 KGRKPKRYRRIVEKMIETSKRKSKDEQHTTETRTSEITNIGNKQEEMKTSKTTKRRKKNN 994
Query: 474 YIEDQTCHETH 484
E+ + H
Sbjct: 995 TQEETPKEKLH 1005
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.128 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,044,396
Number of Sequences: 37544
Number of extensions: 1076515
Number of successful extensions: 2355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2348
Number of HSP's gapped (non-prelim): 11
length of query: 1007
length of database: 14,793,348
effective HSP length: 89
effective length of query: 918
effective length of database: 11,451,932
effective search space: 10512873576
effective search space used: 10512873576
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -