GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002832-TA|BGIBMGA002832-PA|IPR003508|Caspase-activated
nuclease CIDE-N
         (501 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   2.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   8.6  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   8.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   8.6  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   8.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 345 ATSPIQ-DAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDEAVTSEKFLL 403
           A SP   D    +SP+   +  +   D  ++R   R+SS+S  +      E++ SE+  L
Sbjct: 52  AASPTPGDVPTPSSPRSISEDPLNCRDLPNSRCNSRESSDSLVQPRCPSGESMLSERAAL 111

Query: 404 L 404
           L
Sbjct: 112 L 112


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 124 LSSCTSVLSKNDSRDTGGKEKLSV 147
           ++  T    +NDS DT GKE  S+
Sbjct: 763 VNQLTGQCVRNDSSDTNGKETRSI 786


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 124 LSSCTSVLSKNDSRDTGGKEKLSV 147
           ++  T    +NDS DT GKE  S+
Sbjct: 655 VNQLTGQCVRNDSSDTNGKETRSI 678


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 197 KAAISAIPKIVCETIHALELHDETPSWK 224
           +   S  P +  +  H ++LHD+TP  K
Sbjct: 281 RCIFSLRPGLTHKYTHEIKLHDKTPFLK 308


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 88  HRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCT 128
           H   +V+  +S          +  F+++  +A   PL+SC+
Sbjct: 77  HNGAAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCS 117


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 88  HRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCT 128
           H   +V+  +S          +  F+++  +A   PL+SC+
Sbjct: 136 HNGAAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCS 176


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 88  HRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCT 128
           H   +V+  +S          +  F+++  +A   PL+SC+
Sbjct: 77  HNGAAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCS 117


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 88  HRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCT 128
           H   +V+  +S          +  F+++  +A   PL+SC+
Sbjct: 136 HNGAAVSAASSVSAASASMAVAAQFYHQAASAVVDPLNSCS 176


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,726
Number of Sequences: 317
Number of extensions: 4446
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 8
length of query: 501
length of database: 114,650
effective HSP length: 60
effective length of query: 441
effective length of database: 95,630
effective search space: 42172830
effective search space used: 42172830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)