GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002832-TA|BGIBMGA002832-PA|IPR003508|Caspase-activated
nuclease CIDE-N
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.28 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    30   0.65 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    30   0.65 
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    29   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   2.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   8.0  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 23/69 (33%), Positives = 28/69 (40%)

Query: 21  ESFGKCINGNANFKILRHQEITGSRCIAGPGRCGARGAVGEVRGCGGRGTRPGHDSRPVR 80
           +S  KC+  N +F   R   +  S    G G  G RG  G   G GGRG   G   R   
Sbjct: 418 DSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRG 477

Query: 81  PPRSAGAHR 89
             RS   +R
Sbjct: 478 GARSGNPNR 486


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 383 ESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHLTIKDIGIILERLSSKILDVERLDRES 442
           ESE     V ++A  S   ++  D+L           D G +++R+ S++L    LD  S
Sbjct: 731 ESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLL--AELDSIS 788

Query: 443 ESDDCYNWTIKATIRGDAL 461
           + ++ Y + I AT R D L
Sbjct: 789 KDNNKYVFVIGATNRPDLL 807


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 333 EEGRRIAVHKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRD--SSESETENTL 390
           +E  + ++HK V     +D +      G+ +  V+  + +S    D+D  +   ETE+ +
Sbjct: 428 DENNKASLHKDVEE---KDTKITNEDTGKTETDVKAKETDSIEANDKDEKTDSKETEDKV 484

Query: 391 VEDEAVTSEKFLLLIDQLSVDQKRHLT-IKDIGIILERLSSK 431
            E E+  ++      D + VD K   T  K+    +E+  SK
Sbjct: 485 EETESKEADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSK 526


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 343 SVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDE 394
           S  +SP+Q  +P  +   R    + F   +SAR  +  S  SE ++   +DE
Sbjct: 216 SATSSPLQHKRPFTNVPERVSRDIEFAPLDSARPSESSSPYSEVDSAEEDDE 267


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 82  PRSAGAHRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPL--SSCTSVLSKNDSRDT 139
           P ++  +   S T +TSTP   T  T S S  Y        PL  ++CT+  S   +   
Sbjct: 508 PVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTP 567

Query: 140 GGKEKLSVAASEPV 153
                 ++++S PV
Sbjct: 568 VTSSNYTISSSTPV 581


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 371 AESARRGDRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHLTIKDIGIILERLSS 430
           A+S RR  +D S     +   E     S+K L  +++L   +++ L  K +  ++E   S
Sbjct: 362 ADSLRR--KDDSRKRARDRKKERLEEASQKRLEEVNRLKNLKRKELEEK-LNQVIEIAGS 418

Query: 431 KILDVERLDRESESDDCYNWTIKATIRGDALRELGVIYNGNYY 473
           K +DV +LD + E  D   W  K          +  I+N NYY
Sbjct: 419 KNIDVSKLDLD-EDFDPEKWESK----------MSEIFNENYY 450


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 388 NTLVEDEAVTSEKFLLLIDQL-SVDQKRHLTIKDIGIILERLS 429
           NT VE   + S+  L+LIDQ  ++D   H+ I  +  +L  L+
Sbjct: 644 NTFVEASYLVSDNQLVLIDQTKAIDSYDHVPISPLIYLLHSLA 686


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,198
Number of Sequences: 5004
Number of extensions: 82914
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 13
length of query: 501
length of database: 2,362,478
effective HSP length: 76
effective length of query: 425
effective length of database: 1,982,174
effective search space: 842423950
effective search space used: 842423950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)