Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002832-TA|BGIBMGA002832-PA|IPR003508|Caspase-activated
nuclease CIDE-N
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0076 + 40914237-40914315,40914415-40914677 33 0.40
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 31 1.6
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 31 1.6
06_01_0145 + 1092764-1093351 31 1.6
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 31 2.1
09_04_0571 - 18630604-18630957 31 2.8
02_04_0631 - 24611729-24612183,24612467-24612629,24612649-24612870 31 2.8
02_01_0097 + 712586-713035,714120-715080,715577-715746 31 2.8
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 30 3.7
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 30 3.7
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 30 3.7
01_06_0870 + 32601939-32602261,32602368-32602563,32603962-326040... 30 3.7
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 30 4.9
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 29 6.5
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 6.5
01_06_0238 - 27774546-27775418 29 6.5
02_01_0583 + 4320543-4321613,4321725-4321967,4323506-4323883 29 8.6
>01_07_0076 + 40914237-40914315,40914415-40914677
Length = 113
Score = 33.5 bits (73), Expect = 0.40
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 24 GKCINGNANFKILR-HQEITGSRCIAGP-GRCGARGAVGEVRGCGGRGTRPGHDSRPVRP 81
GKC GN N ++ H+E TG C G +C G G GG G G D P+R
Sbjct: 42 GKC-RGNRNCAMICVHEEYTGGYCSKGVFSKCMCTKRCGGGGGGGGGGGGGGGDEPPLRE 100
Query: 82 PR 83
R
Sbjct: 101 AR 102
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 31.5 bits (68), Expect = 1.6
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 41 ITGSRCIAGPGRCGARGAVGEVRGCGG------RGTRPGHDSRPVRPPRSAGAHR 89
+ GSR +GPG G+ GA G G +G R SRP PPR GA R
Sbjct: 218 VCGSRT-SGPGGGGSSGAPGPSHGPRDDSASDLKGKRKMPKSRPPSPPRGGGAER 271
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 31.5 bits (68), Expect = 1.6
Identities = 19/45 (42%), Positives = 20/45 (44%)
Query: 48 AGPGRCGARGAVGEVRGCGGRGTRPGHDSRPVRPPRSAGAHRALS 92
AG G GA G G V G GG G P P PR RAL+
Sbjct: 41 AGGGGVGAPGGRGGVVGVGGGGAAPELSLGPEPTPRGVAYLRALA 85
>06_01_0145 + 1092764-1093351
Length = 195
Score = 31.5 bits (68), Expect = 1.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 49 GPGRCGARGAVGEVRGCGGRGTRPGHDSR 77
GPG G RG G G GGRG + G R
Sbjct: 121 GPGGIGGRGGDGGCGGVGGRGRKGGRGGR 149
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 31.1 bits (67), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 125 SSCTSVLSKNDSRDTGGKEKLSVAASEPVRLVLESDGT 162
+SC +VL D TG + + S A + RL++ S+GT
Sbjct: 255 TSCEAVLPNGDVVKTGSRARKSAAGYDLARLIIGSEGT 292
>09_04_0571 - 18630604-18630957
Length = 117
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 51 GRCGARGAVGEVRGCGGRGTRPGHDSRPV-----RPPRSAGAHR 89
G RG G G GGR T PGH+ +P RPP AG R
Sbjct: 18 GGARVRGGGGHGEG-GGRWTTPGHEEQPKGYLFNRPPPPAGESR 60
>02_04_0631 -
24611729-24612183,24612467-24612629,24612649-24612870
Length = 279
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/38 (55%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 41 ITGSRC-IAGPG-RCGARGAVGEVRGCGGRGTRPGHDS 76
ITGS IAG G RCG G G RGCGG G G S
Sbjct: 33 ITGSASTIAGSGARCGRGG--GWQRGCGGSGDAGGSGS 68
>02_01_0097 + 712586-713035,714120-715080,715577-715746
Length = 526
Score = 30.7 bits (66), Expect = 2.8
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 7 LRNFVLLKSLYFPFESFGKCI------NGNANFKILRHQEITGSRCIAGPGRCGARGAVG 60
LRNF L FP E + K I G+ K R + TG R AG CGA A
Sbjct: 446 LRNFDLELISPFPEEEWEKFIPGPKGGGGDGRGKGWRKRR-TGGRPAAGGRGCGAHAAAP 504
Query: 61 EVRGCGGRG 69
V G GG G
Sbjct: 505 RVGGRGGAG 513
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 30.3 bits (65), Expect = 3.7
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 51 GRCGARGAVGEVRGCGGRGTRPGHDSRPVRP--PRSAGAHRALSVTHITSTP-QIDTQFT 107
G G G G G GGRG R GH R RP R R V H P + T
Sbjct: 60 GGGGGGGGGGGGGGGGGRGGRGGHARRDARPRDDRGRDGPRDDRVRHGDRRPHDYRPRRT 119
Query: 108 PSPSFFYRM 116
PSP +R+
Sbjct: 120 PSPGRDHRI 128
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 30.3 bits (65), Expect = 3.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 8 RNFVLLKSLYFPFESFGKCINGN--ANFKILRHQEITGSRCI 47
R FVLL LY P+ F C NG A + Q+ + C+
Sbjct: 816 RYFVLLAKLYMPYAFFNACFNGTNLARLQTATTQDQSKEACV 857
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 30.3 bits (65), Expect = 3.7
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 43 GSRCIAGPGRC-GAR-GAVGEVRGCGGRGTRPGHDSRPVRPPRSAGAHRALS 92
G + G GR G R G G R RG R D+ PPR GA RA S
Sbjct: 293 GEQSTPGGGRASGPRDGGPGGSRPADARGKRKQEDTPSPSPPRGGGAVRASS 344
>01_06_0870 +
32601939-32602261,32602368-32602563,32603962-32604093,
32604181-32604303
Length = 257
Score = 30.3 bits (65), Expect = 3.7
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 31 ANFKILRHQEITGSRCIAGPGRCGARGAVGEVRGCGGRGTRPGHDSRPVRPPRSAGAHRA 90
A +LR G C G AR A + G GGRG G + P PPR A RA
Sbjct: 15 AGLALLRRGCGEGGTCGKGEAPANARRAAATLAGLGGRGPL-GRWADPTGPPRGE-AERA 72
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 29.9 bits (64), Expect = 4.9
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 343 SVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDEAVTSEKFL 402
+VA P+ A Q P+ H + ++ D DS + ++++ +V+D TS F
Sbjct: 191 NVAPHPVVSAPVANGLQWVPRSHSSGSEMDNGE--DYDSYDDDSDDDMVDD---TSGDFD 245
Query: 403 LLIDQLSVD-QKRHLTIKDIGIILERLS 429
+ + + +KRH +K I +LE+LS
Sbjct: 246 SKASEKNFETRKRHKLLKSIFELLEKLS 273
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 29.5 bits (63), Expect = 6.5
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 48 AGPGRCGARGAVGEVRGCGGRGTRPGHDSRPVRPPRSAGAHRALSVTHITSTPQIDTQFT 107
A PG ARG+ G GRGT P P S A V I ++ +
Sbjct: 99 AAPGGTSARGS-STPGGRSGRGTSPARAPSTSAPSTSPTATTRSGVAWICRVRDAESAYE 157
Query: 108 PSPSFFYR 115
P+ +Y+
Sbjct: 158 PNDQLWYK 165
>04_04_1149 +
31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.5 bits (63), Expect = 6.5
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 48 AGPGRCGARGAVGEVRGCGGRGTRPG 73
AG G G RG G G GGRG PG
Sbjct: 35 AGGGGVGGRGGRGPPGGGGGRGYEPG 60
>01_06_0238 - 27774546-27775418
Length = 290
Score = 29.5 bits (63), Expect = 6.5
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 78 PVRPPRSAGAHRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCTSVL-SKNDS 136
P PP +A A+++++ T+T + TP P + AAA P T +L + ++
Sbjct: 166 PRAPPAAAAANKSMAAPPPTATKSKTEEATPPPDDVKPVVAAAQTP---DTKILRAAKEA 222
Query: 137 RDTGGKEKLSVAAS 150
TG K K V +S
Sbjct: 223 AATGCKRKADVKSS 236
>02_01_0583 + 4320543-4321613,4321725-4321967,4323506-4323883
Length = 563
Score = 29.1 bits (62), Expect = 8.6
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 83 RSAGAHRALSVTHITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCTSVLSKNDSRDTGGK 142
R+AG L IT TP +D F Y+ + P+S+ S+ + + D GG
Sbjct: 23 RAAGMGHGLDPEGITITPLMDMVL----GFLYQ--SIPRPPVSASASLSAAAATGDGGGD 76
Query: 143 EKLSVAASEPVRLVLE----SDGTQVED-GDYWRTLPPNTVLLLL 182
+++S+ + +R V+ DG + WR L +T L+L+
Sbjct: 77 DRISLLPDDILRAVVSRLPAKDGARTAVLSSRWRRLWRSTPLVLV 121
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,574
Number of Sequences: 37544
Number of extensions: 644288
Number of successful extensions: 1835
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 26
length of query: 501
length of database: 14,793,348
effective HSP length: 85
effective length of query: 416
effective length of database: 11,602,108
effective search space: 4826476928
effective search space used: 4826476928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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