GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002832-TA|BGIBMGA002832-PA|IPR003508|Caspase-activated
nuclease CIDE-N
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                45   1e-04
SB_1467| Best HMM Match : CIDE-N (HMM E-Value=8.9e-23)                 44   2e-04
SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)                   31   1.6  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   31   1.6  
SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08)                   31   2.9  
SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)              30   5.0  
SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 141 GKEKLSVAASEPVRLVLESDGTQVEDGDYWRTLPPNTVLLLLRQGERW 188
           G EKL++A     R+ LE DGT+V+D +Y+  LP  T L+L+  G  W
Sbjct: 798 GSEKLNIARD--CRVFLEEDGTEVDDEEYFSFLPDQTKLMLVEPGSSW 843


>SB_1467| Best HMM Match : CIDE-N (HMM E-Value=8.9e-23)
          Length = 162

 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 156 VLESDGTQVEDGDYWRTLPPNTVLLLLRQGERW 188
           V   DGT VED DY+ TLPP TVL+++R  E W
Sbjct: 44  VCMEDGTDVEDEDYFDTLPPQTVLVIVRPDEDW 76


>SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)
          Length = 292

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 378 DRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHLTIKDIGIILERLSSKILDVER 437
           + +SSESETE  L ED+ + S+K +LL    S  Q   L+ K + +  E +  + +D   
Sbjct: 195 EENSSESETEELLREDK-MNSDKDMLLAPDKSKSQTLPLSRK-VLLRSEAIDRQEIDTSG 252

Query: 438 LDRESES 444
           +D+E  S
Sbjct: 253 VDQEIPS 259


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 333 EEGRRIAVHKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVE 392
           ++ + I   +   TSP   A PRASP+  P+   R   + S+ R  R+SS   +      
Sbjct: 311 KQDKAIGTDQPEVTSP--RATPRASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPR 368

Query: 393 DEAVTSEKFL 402
               TS + L
Sbjct: 369 SSRPTSSRKL 378


>SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08)
          Length = 733

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 341 HKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDEAVTSEK 400
           ++S    P +  + RA  +GR     R L   +   G RD+ ES+ E T+++ E  TS+ 
Sbjct: 416 NESAENVPTRRQKGRAKRRGRLSTRERHLSEATDSDGPRDNHESDFEETVLKKE--TSKS 473

Query: 401 FLLLIDQLSV-DQKRHLTIK 419
               +D  ++ +QKR    K
Sbjct: 474 DFEKVDGNNIKEQKRERRAK 493


>SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)
          Length = 286

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 36  LRHQEIT-GSRCIAGPGRCGARGAVGEVRGCGGRGTRPGH-DSRPVRPPRSAGAHRALSV 93
           L+ +++T G+   +G     ARG+ G+ R    + T+P   + +P+ PP  AG+  ALS 
Sbjct: 58  LQEKKVTSGTPATSGVKPGSARGS-GKSRSANKQKTKPQVVNDKPLPPPNMAGSQHALS- 115

Query: 94  THITSTPQIDTQFTPSPSFF 113
            H T         T S   F
Sbjct: 116 -HKTPQAPFQKSVTDSQQVF 134


>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 162 TQVEDGDYWRTLPPNTVLLLLRQ 184
           T  +DGDYWR L P T ++ +++
Sbjct: 351 TSFQDGDYWRFLVPGTYMVRVKK 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,078
Number of Sequences: 59808
Number of extensions: 678509
Number of successful extensions: 1669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1661
Number of HSP's gapped (non-prelim): 8
length of query: 501
length of database: 16,821,457
effective HSP length: 85
effective length of query: 416
effective length of database: 11,737,777
effective search space: 4882915232
effective search space used: 4882915232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)