GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002832-TA|BGIBMGA002832-PA|IPR003508|Caspase-activated
nuclease CIDE-N
         (501 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    39   0.009
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    32   1.1  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    32   1.1  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    32   1.1  
Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    30   4.4  
Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical pr...    29   5.8  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   7.6  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   7.6  
U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    29   7.6  

>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 27  INGNANFKILRHQEITGSRCIAGP-GRCGARGAVGE--VRGCGGRGTRPGHDSRPVRPPR 83
           ++G+   K++R+ + T  +C AGP G  GA G+VGE   +G  G G RPG+  RP  PP 
Sbjct: 127 MSGSELTKMMRNDD-TCIKCPAGPPGPRGAPGSVGEPGPQGRDGMGGRPGNMGRP-GPPG 184

Query: 84  SAG 86
            AG
Sbjct: 185 PAG 187


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
           protein F26H11.2c protein.
          Length = 2266

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 338 IAVHKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDEAVT 397
           I+V  + A++P   +  +A  +GRPK +      +S +R + D    + ++   E+E  +
Sbjct: 134 ISVRSTPASTPAPKSTSKA--RGRPKKNPTPPRRKSLKRQEEDIIYMDEDSE--EEEESS 189

Query: 398 SEKFLLLIDQLSVDQKRHLTIKDIGI 423
            ++F+L  DQ+  +++  L + DI I
Sbjct: 190 DDEFMLNEDQVVQEEEEELNLTDIKI 215


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
           protein F26H11.2b protein.
          Length = 1693

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 338 IAVHKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDEAVT 397
           I+V  + A++P   +  +A  +GRPK +      +S +R + D    + ++   E+E  +
Sbjct: 134 ISVRSTPASTPAPKSTSKA--RGRPKKNPTPPRRKSLKRQEEDIIYMDEDSE--EEEESS 189

Query: 398 SEKFLLLIDQLSVDQKRHLTIKDIGI 423
            ++F+L  DQ+  +++  L + DI I
Sbjct: 190 DDEFMLNEDQVVQEEEEELNLTDIKI 215


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
           protein F26H11.2a protein.
          Length = 1691

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 338 IAVHKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLVEDEAVT 397
           I+V  + A++P   +  +A  +GRPK +      +S +R + D    + ++   E+E  +
Sbjct: 134 ISVRSTPASTPAPKSTSKA--RGRPKKNPTPPRRKSLKRQEEDIIYMDEDSE--EEEESS 189

Query: 398 SEKFLLLIDQLSVDQKRHLTIKDIGI 423
            ++F+L  DQ+  +++  L + DI I
Sbjct: 190 DDEFMLNEDQVVQEEEEELNLTDIKI 215


>Z49069-2|CAA88865.1|  333|Caenorhabditis elegans Hypothetical
           protein K12D12.3 protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 39  QEITGSRCIAGP-GRCGARGAVGEVRGCGGRGTRPGHDSRPVRP-PRSAG 86
           Q    ++C AGP G  G+ G+ G   G  G   +PGHDS  V P P+  G
Sbjct: 119 QSAAENKCHAGPPGPKGSPGSPGP-NGVPGVDGKPGHDSLDVTPEPQDTG 167


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/38 (50%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 49  GPGRCGARGAVGEVRGCGGRGTRPGHDSRPVRPPRSAG 86
           GPG  GA GAV EV G  G    PG    P  PP  AG
Sbjct: 221 GPGNPGAPGAVTEVPGQQGPPGPPG----PAGPPGPAG 254


>Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical
           protein T05A1.2 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 50  PGRCGARGAVGEVRGCGGRGTRPGHDSRPVRPPRS 84
           PG  G+ GA G   G  GR   PG    P +PP+S
Sbjct: 103 PGAAGSVGAAGRP-GTPGRPGAPGAPGHPGKPPQS 136


>Z46791-2|CAA86756.1|  283|Caenorhabditis elegans Hypothetical
           protein C09G5.3 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 50  PGRCGARGAVGEVRGCGGRGTR--PGHDSRPVRPPRSA 85
           PG  GA G  G+    GG+G +  PG   RP +P R A
Sbjct: 165 PGNDGADGTPGKSGAPGGKGPQGPPGTPGRPGQPGRKA 202


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 332 HEEGRRIAVHKSVATSPIQDAQPRASPQGRPKGHVRFLDAESARRGDRDSSESETENTLV 391
           H++     V + +AT PI    P  S +   +      D+      D D  E +    +V
Sbjct: 261 HQDPNVQQVIRPLATIPIY---PPTSDESGDETPQPAADSADESEDDNDIQELDDMQPIV 317

Query: 392 EDEAVTSEKFLLLIDQLSVDQKRHLTIKDIGIILERLSSKILDVERLD 439
           EDEA+  ++F   +       K  ++ +D+ +ILE + S     E +D
Sbjct: 318 EDEALKKDEFWKTL-------KTRISEEDVDLILETMKSTAKVKEDID 358


>AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical
           protein F32B5.7 protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 48  AGPGRCGARGAVGEVRGCGGRG 69
           A  G CGA GA G   GCGG G
Sbjct: 762 AACGACGACGACGACGGCGGCG 783



 Score = 29.1 bits (62), Expect = 7.6
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 43  GSRCIAGPGRCGARGAVGEVRGCGGRG 69
           G+ C A  G CGA GA G   GCGG G
Sbjct: 761 GAACGAC-GACGACGACGGCGGCGGCG 786


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 43  GSRCIAGPGRCGARGAVG----EVRGCGGRGTRPGHDSRPVRP---PRSAGAHRALSVTH 95
           G+R I+ PG  G  G  G    +    GG G  P   + P  P   P SAGA        
Sbjct: 164 GTRSISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPG 223

Query: 96  ITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCTSVLSKNDSRDTGG 141
               P  D  + P P    R  A AG        V   +DS   GG
Sbjct: 224 QDGAPGSDAAYCPCPP---RSGAIAGGGGGGDAGVSGGSDSAVGGG 266


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 43  GSRCIAGPGRCGARGAVG----EVRGCGGRGTRPGHDSRPVRP---PRSAGAHRALSVTH 95
           G+R I+ PG  G  G  G    +    GG G  P   + P  P   P SAGA        
Sbjct: 164 GTRSISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAGPAGPPGPDGNPGSAGADGQPGGPG 223

Query: 96  ITSTPQIDTQFTPSPSFFYRMWAAAGKPLSSCTSVLSKNDSRDTGG 141
               P  D  + P P    R  A AG        V   +DS   GG
Sbjct: 224 QDGAPGSDAAYCPCPP---RSGAIAGGGGGGDAGVSGGSDSAVGGG 266


>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
          protein, small subunitprotein 2 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 49 GPGRCGARGAVGEVRGCGGRGTRPGHDSRPVRPPRSAGAHRALSVTHIT 97
          G GR GAR A     G GGRG R G   R  R  R  G  +    T +T
Sbjct: 15 GGGRGGARPAGDRPAGRGGRGGRGGRGGRGGRAGR--GGEKETEWTPVT 61


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,001
Number of Sequences: 27539
Number of extensions: 492168
Number of successful extensions: 1374
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 23
length of query: 501
length of database: 12,573,161
effective HSP length: 84
effective length of query: 417
effective length of database: 10,259,885
effective search space: 4278372045
effective search space used: 4278372045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)