Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002832-TA|BGIBMGA002832-PA|IPR003508|Caspase-activated
nuclease CIDE-N
(501 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 27 0.36
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 25 1.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 2.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 24 2.5
AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C prot... 24 3.4
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 23 4.5
AY569719-1|AAS86672.1| 401|Apis mellifera complementary sex det... 23 5.9
AY569718-1|AAS86671.1| 401|Apis mellifera complementary sex det... 23 5.9
AY569715-1|AAS86668.1| 401|Apis mellifera complementary sex det... 23 5.9
AY569714-1|AAS86667.1| 401|Apis mellifera complementary sex det... 23 5.9
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 5.9
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 27.1 bits (57), Expect = 0.36
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 369 LDAESARRGDRDSSESETENTLVEDE 394
LDA S+RRG + S + E+T + +E
Sbjct: 646 LDASSSRRGSKIGSPTPAESTFIPEE 671
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 25.4 bits (53), Expect = 1.1
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 80 RPPRSAGAHRALSVTHITSTPQIDTQ---FTPSP-SFFYRMWAAAGK--PLS 125
RPP SA ++ + + TSTP ++ F P+P SF + M A A + PLS
Sbjct: 272 RPPASASSNEHEAESEHTSTPNFLSEAKIFPPTPGSFNFSMAALATEHTPLS 323
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 24.2 bits (50), Expect = 2.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 339 AVHKSVATSPIQDAQPRASP--QGRPKGHVRFLDAESARRGDRDSSESET 386
A H S + + + R P RPK F E +R G R +S+T
Sbjct: 608 AAHASASEESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHKSDT 657
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 24.2 bits (50), Expect = 2.5
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 339 AVHKSVATSPIQDAQPRASP--QGRPKGHVRFLDAESARRGDRDSSESET 386
A H S + + + R P RPK F E +R G R +S+T
Sbjct: 576 AAHASASEESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHKSDT 625
>AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C
protein.
Length = 149
Score = 23.8 bits (49), Expect = 3.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 403 LLIDQLSVDQKRHLTIKDIGIILERLS 429
L +D + +DQ H+ I D G+ E +S
Sbjct: 111 LKLDNVLLDQDGHIKIADFGMCKEGIS 137
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 23.4 bits (48), Expect = 4.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 71 RPGHDSRPVRPPRSAGAHRALS 92
+PGH S PV+ RS+ A S
Sbjct: 272 QPGHGSPPVKQHRSSSASTTCS 293
>AY569719-1|AAS86672.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 372 ESARRGDRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHL 416
E +R DR+S ++ E + D + +K DQL +++HL
Sbjct: 235 EDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569718-1|AAS86671.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 372 ESARRGDRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHL 416
E +R DR+S ++ E + D + +K DQL +++HL
Sbjct: 235 EDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569715-1|AAS86668.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 372 ESARRGDRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHL 416
E +R DR+S ++ E + D + +K DQL +++HL
Sbjct: 235 EDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY569714-1|AAS86667.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 372 ESARRGDRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHL 416
E +R DR+S ++ E + D + +K DQL +++HL
Sbjct: 235 EDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.0 bits (47), Expect = 5.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 372 ESARRGDRDSSESETENTLVEDEAVTSEKFLLLIDQLSVDQKRHL 416
E +R DR+S ++ E + D + +K DQL +++HL
Sbjct: 235 EDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHL 279
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,314
Number of Sequences: 429
Number of extensions: 5713
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 11
length of query: 501
length of database: 140,377
effective HSP length: 61
effective length of query: 440
effective length of database: 114,208
effective search space: 50251520
effective search space used: 50251520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)
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