GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002830-TA|BGIBMGA002830-PA|undefined
         (94 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    40   8e-05
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    27   0.47 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    24   3.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    24   3.3  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 39.5 bits (88), Expect = 8e-05
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 12  FASAAEEKVIRVFTAPHNFISNFKNLVGEVLVANNEKGPEGASVPSLGLSNKAVFIEE 69
           F S A+EKV RVF  P   +     L    +    E  P+ A+VP LGLSNKA    E
Sbjct: 431 FLSCADEKVSRVFKFPKTIVRLLYRLCDTNI--GEESLPDAANVPLLGLSNKATTASE 486


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 27  PHNFISNFKNLVGEVLVANNEKGPEGASVPSL 58
           P N  +N+ ++VG+  + +  KGPE  S  SL
Sbjct: 74  PSNSHNNYASIVGDASIGHYLKGPERTSEVSL 105


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 6   PLTATTFASAAEEKVIRVFTAPHNFISNFKN 36
           P   +T     EE+V   F+AP N   NF +
Sbjct: 80  PEKISTLQQVKEEEVSNTFSAPLNATGNFSS 110


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 20  VIRVFTAPHNFISNFKNLVGEVLVANNEKGP-EGASVPSLGLSNK 63
           V +V  AP   + NF+  V +  +++ E G  +  S+P L + +K
Sbjct: 283 VDKVRVAPTEVLKNFEERVSQFAISSQEVGDIKKGSLPGLEILSK 327


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,729
Number of Sequences: 5004
Number of extensions: 11777
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 2,362,478
effective HSP length: 62
effective length of query: 32
effective length of database: 2,052,230
effective search space: 65671360
effective search space used: 65671360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)