Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002830-TA|BGIBMGA002830-PA|undefined
(94 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781... 34 0.018
06_03_0085 + 16431503-16431568,16431981-16432152,16432402-164324... 27 2.1
02_03_0039 - 14228876-14228878,14229578-14229727,14230457-142306... 27 2.1
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172... 26 4.8
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628... 26 4.8
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 26 4.8
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 25 6.4
12_02_0319 + 17482431-17482538,17482808-17482861,17482958-174831... 25 8.5
>08_02_1111 +
24377268-24377444,24377543-24377630,24378072-24378157,
24378358-24378511,24378723-24378883,24378964-24379632,
24379860-24380058,24380188-24380405,24380578-24380755,
24380859-24381358
Length = 809
Score = 33.9 bits (74), Expect = 0.018
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 12 FASAAEEKVIRVFTAPHNFISNFKNLVGEVLVANNEKGP------EGASVPSLGLSNKAV 65
F S A+EKV RVF AP +F+ K L L+ + G GA++ +LGLS K +
Sbjct: 452 FVSGADEKVSRVFEAPLSFL---KTLQHATLLKTDNSGDFDDVQVLGANMSALGLSQKPI 508
Query: 66 F 66
+
Sbjct: 509 Y 509
>06_03_0085 +
16431503-16431568,16431981-16432152,16432402-16432464,
16432792-16433332,16433419-16433543,16433988-16434100,
16434565-16434678
Length = 397
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 4 VAPLTATTFASAAEEKVIRVFTAPHNFISNFKNLV-GEVLVA 44
VA +T + S AE++++R+ NF+ ++ +V GE VA
Sbjct: 158 VAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVA 199
>02_03_0039 -
14228876-14228878,14229578-14229727,14230457-14230631,
14231320-14231822
Length = 276
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 3 AVAPLTATTFASAAEEKVIRVFTAPHNFISNFKNLVGEVLVANN 46
A+ T F ++ +V+R FTA + + +++VG + ANN
Sbjct: 90 AMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYAVKANN 133
>08_01_0216 -
1717696-1718265,1718856-1720082,1720558-1720627,
1721579-1721602,1722073-1722140
Length = 652
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 6 PLTATTFASAAEEK--VIRVFTAPHNFISNFK 35
P TATT A+A+EEK V++ T P +S K
Sbjct: 614 PTTATTTATASEEKMAVVKGDTTPRLKLSRHK 645
>06_03_0086 +
16458881-16458952,16461795-16461966,16462621-16462889,
16463045-16463316,16463409-16463533,16463852-16463964,
16464579-16464692
Length = 378
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 4 VAPLTATTFASAAEEKVIRVFTAPHNFISNFKNLV-GE---VLVANNEKGPEGASVPSLG 59
VA +T + S AE++++R+ NF+ +V GE +A+ EG +V ++G
Sbjct: 139 VAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVG 198
>05_01_0121 -
833885-833949,834180-834430,834545-834604,
834893-834926,835746-835805,836409-836509,
836939-837039,837209-837289,837580-837650,
837738-837849,838138-838173,838865-838951,839055-839396
Length = 466
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 13 ASAAEEKVIRVFTAPHNFISNFKNLVGEVLVANNEKGPEGAS 54
+SAA + + ++ P NF S + L+ + +A + +GP GA+
Sbjct: 29 SSAAAGEPVYLWPLPRNFTSGSRTLLVDPDLALDGQGPGGAA 70
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 18 EKVIRVFTAPHNFISNFKNLVGEVLVANNEKGPEGASVPSLGLSN 62
E ++ V AP F ++F E+ ++ G E VP+LG++N
Sbjct: 729 EHLVEVTRAPTLFATHFH----ELTALGHKSGDEHQHVPNLGIAN 769
>12_02_0319 +
17482431-17482538,17482808-17482861,17482958-17483125,
17483211-17483264,17483354-17483503,17484149-17484523
Length = 302
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 27 PHNFISNFKNLVGEVLVANNEKGPEGASVPSLG-------LSNKAVFIEE 69
P N +N +L + EGAS P +G LS+KA IE+
Sbjct: 202 PANLFTNLSEKATSILFGGSVLAVEGASTPPMGSGLLPSILSDKAASIED 251
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,142
Number of Sequences: 37544
Number of extensions: 66440
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 8
length of query: 94
length of database: 14,793,348
effective HSP length: 70
effective length of query: 24
effective length of database: 12,165,268
effective search space: 291966432
effective search space used: 291966432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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