GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002830-TA|BGIBMGA002830-PA|undefined
         (94 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  57   2e-09
SB_4827| Best HMM Match : RCSD (HMM E-Value=1.7)                       29   0.71 
SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)             27   2.9  
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)         25   8.8  
SB_21574| Best HMM Match : T-box (HMM E-Value=0)                       25   8.8  

>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 36/73 (49%), Positives = 43/73 (58%), Gaps = 7/73 (9%)

Query: 1   MSAVAPLTATTFASAAEEK------VIRVFTAPHNFISNFKNLVG-EVLVANNEKGPEGA 53
           M  V  L   T AS AEEK      V+RVF AP  F+   ++L G +  V  N + P GA
Sbjct: 63  MQCVTMLNRYTLASGAEEKLCDWLQVVRVFKAPQQFLITLQSLCGVQEAVMENIELPLGA 122

Query: 54  SVPSLGLSNKAVF 66
           SVP+LGLSNKAVF
Sbjct: 123 SVPALGLSNKAVF 135


>SB_4827| Best HMM Match : RCSD (HMM E-Value=1.7)
          Length = 269

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 11  TFASAAEEKVIRVFTA--PHNFISNFKNLVGEVLVANNEK-GPEGASVPSLGLSNKAVF 66
           T A + ++++ R  TA  P N +S F+ + G++ V NNEK  P G+ V    L  ++ +
Sbjct: 204 TAAQSYQQQLTRRQTADGPINALSTFRPINGDIDVLNNEKTKPAGSPVWRTRLEGESAY 262


>SB_1573| Best HMM Match : Thiolase_C (HMM E-Value=1.6e-40)
          Length = 331

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3  AVAPLTATTFASAAEEKVIRVFTAPHNFIS-NFKNLVGEVLVANNE 47
          A AP+T   F +A +E + +  T P +F    +KN +  V  AN++
Sbjct: 41 AAAPITPQMFGNAGKEHMQKYGTKPEHFAKIAYKNHLHSVNNANSQ 86


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 21  IRVFTAPHNFISNFKNL 37
           +R F APH+ I NF+N+
Sbjct: 302 LRRFNAPHHTIYNFRNI 318


>SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)
          Length = 1067

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 18  EKVIRVFTAPHNFISNFKNLVGEVLVANNEKGPEGASV 55
           ++V R+  +   F S+F + +G  LV  +E GP G ++
Sbjct: 826 KQVYRLLNSDGIFSSDFTDKMGFHLVLESEPGPSGENL 863


>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
          Length = 473

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 2   SAVAPLTATTFASAAEEKVI---RVFTAPHNFISNFKNLVGEVLVANNEKGPEG 52
           S + PL  TT +S +   ++   R+ + P + +    +L+GE L   N  G +G
Sbjct: 229 SDIPPLPPTTISSTSNSSLVQSARLDSQPLDPVFQRSSLLGEYLSYQNPVGDQG 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,520
Number of Sequences: 59808
Number of extensions: 70205
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 6
length of query: 94
length of database: 16,821,457
effective HSP length: 70
effective length of query: 24
effective length of database: 12,634,897
effective search space: 303237528
effective search space used: 303237528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)