GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002830-TA|BGIBMGA002830-PA|undefined
         (94 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    46   3e-06
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    26   3.4  
L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promot...    25   5.9  
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    25   7.7  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    25   7.7  

>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 1   MSAVAPLTATTFASAAEEKVIRVFTAPHNFISNFKNLVG---EVLVANNEKGPEGASVPS 57
           M  ++ +  + F S AEEKV R F AP +F+ + + + G   E    +++    GA VP+
Sbjct: 446 MQCLSFVNPSIFVSGAEEKVFRAFRAPKSFVKSLEAISGVPTEKSFGDSDLAEFGACVPA 505

Query: 58  LGLSNK 63
           LGLSNK
Sbjct: 506 LGLSNK 511


>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical protein
            C38D9.3 protein.
          Length = 1496

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 4    VAPLTATTFASAAEEKVIRVFTAPHNFISNFKNLVGEV 41
            +  L    +A  + E +I +     +F+SN+K+L+G +
Sbjct: 1269 ILDLKLLRYALFSAEAMINIVIIVSDFVSNYKSLIGRI 1306


>L15314-1|AAF99984.2|  728|Caenorhabditis elegans Anaphase promoting
           complex; seealso mat protein 2 protein.
          Length = 728

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 20  VIRVFTAPHNFISNFKNLVGEVLVANNEKGPE 51
           ++ V+ +   F+  ++NL+ E L +++ K PE
Sbjct: 402 LVSVYGSKELFVKEYRNLLAERLSSSDNKDPE 433


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 31  ISNFKNLVGEVLVANNEKGPEGASVPSLGLSNKAVFI 67
           + NFK  V       N  G EG  V  LG+ N A+ I
Sbjct: 152 LDNFKGKVVHAYDYTNTSGYEGKDVFLLGIGNSALDI 188


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 31  ISNFKNLVGEVLVANNEKGPEGASVPSLGLSNKAVFI 67
           + NFK  V       N  G EG  V  LG+ N A+ I
Sbjct: 152 LDNFKGKVVHAYDYTNTSGYEGKDVFLLGIGNSALDI 188


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,635
Number of Sequences: 27539
Number of extensions: 60673
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 5
length of query: 94
length of database: 12,573,161
effective HSP length: 69
effective length of query: 25
effective length of database: 10,672,970
effective search space: 266824250
effective search space used: 266824250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)