GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002830-TA|BGIBMGA002830-PA|undefined
         (94 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    20   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.7  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS
          protein.
          Length = 80

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 32 SNFKNLVGEVLVANNEKGPEG 52
          S+F +LV    V+ N   PEG
Sbjct: 40 SHFASLVRNASVSGNLDAPEG 60


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 48  KGPEGASVPSLGL 60
           +GP G SVPS  L
Sbjct: 985 EGPAGRSVPSAEL 997


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 48  KGPEGASVPSLGL 60
           +GP G SVPS  L
Sbjct: 981 EGPAGRSVPSAEL 993


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,635
Number of Sequences: 429
Number of extensions: 713
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 94
length of database: 140,377
effective HSP length: 49
effective length of query: 45
effective length of database: 119,356
effective search space:  5371020
effective search space used:  5371020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)