GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    47   2e-06
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.4  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   8.4  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 60  NFAIVHILGKQWRVTDGDLLVVEGYWPP-NIGDQITLDKVLVAATKDFSLIGRPLVQPGL 118
           ++A  +I  + + +  GD L +  +     +GD I LDK+    ++DF+L G P V P L
Sbjct: 805 HYADAYIFNRHFVIAKGDQLGLPFHLKGVQVGDTIRLDKIASFGSRDFTLFGNPYVDPSL 864

Query: 119 VTVTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILR 159
            T+ A ++S   S            +  R+   +   TILR
Sbjct: 865 FTIEAVVLSFPKSALSVRVKHKRRHRHDRVMKHKQTYTILR 905


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 127 SKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSVEI 165
           S G SH            F++ NF+ A Q  LR + ++I
Sbjct: 28  SLGNSHPNESLDYYIYDYFVKHNFEEAAQAFLRESKIQI 66


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 1   MALLRSGLQRVANIFGGTQGGIL-------SRFVTSLVP 32
           + L R G++++A   GG+ GG+L         FV S+VP
Sbjct: 146 LILQRLGVKQIAMAVGGSMGGMLVLEWAFDKEFVRSIVP 184


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,889
Number of Sequences: 5004
Number of extensions: 23367
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 2,362,478
effective HSP length: 68
effective length of query: 108
effective length of database: 2,022,206
effective search space: 218398248
effective search space used: 218398248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)