GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0078 - 27536211-27536282,27536396-27536470,27537411-275375...    46   2e-05
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900...    45   4e-05
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207...    28   4.9  
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612...    27   8.5  
05_07_0175 - 28164252-28164529,28165381-28166560                       27   8.5  

>05_07_0078 -
           27536211-27536282,27536396-27536470,27537411-27537512,
           27538153-27538233,27538322-27538744
          Length = 250

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 61  FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVT 120
           FA+V I   Q++V++GD +  E     ++ D++ L++VL+  ++  ++IGRP +     T
Sbjct: 137 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGSQSQTVIGRPTLPD--AT 194

Query: 121 VTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSVE 164
           V A +    L      F       + R    R + T LRI ++E
Sbjct: 195 VHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITNIE 238


>02_02_0328 -
           9004670-9004753,9004873-9004947,9005031-9005132,
           9005681-9005761,9006233-9006535
          Length = 214

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 61  FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVT 120
           FA+V I  +Q+ V  G  +  +     N+ DQI L+KVL+ +T+D + IG P+V      
Sbjct: 97  FAVVMIGSRQYIVMPGRYIYTQRLKGANVNDQIILNKVLLVSTRDKAYIGMPVVTN--AA 154

Query: 121 VTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSV 163
           V A +  +G       F      ++ R    R   T LRI  +
Sbjct: 155 VHAVVEEQGRDDKVIVFKYKKKKKYQRKLGHRQPNTRLRITGI 197


>03_03_0219 -
           15519076-15520050,15520376-15520579,15520755-15520791,
           15522025-15522104
          Length = 431

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 24  SRFVTSLVPSENKSVAETSKE 44
           SRFVT+LVPS   S AET ++
Sbjct: 189 SRFVTTLVPSVGLSTAETLRK 209


>12_02_0333 +
           17660454-17660502,17660587-17660704,17661181-17661255,
           17661341-17661412,17661606-17661643,17661758-17661791,
           17662396-17662519,17663334-17663417,17663991-17664056,
           17664110-17664316
          Length = 288

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 61  FAIVHILGKQWRVTDGDLLVVEG-YWPPNIGDQITLDKVLVAATKDFSLIGR 111
           F + H LGK+     G+   VEG YW   +G  + L   ++A   D S + R
Sbjct: 151 FGLEHALGKRTTADSGEFWHVEGFYWRNPVG-CVDLYSHILATIVDLSYLHR 201


>05_07_0175 - 28164252-28164529,28165381-28166560
          Length = 485

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 11  VANIFGGTQGGILSRFVTSLVPSENKSVAETSKEVIATCNKLIEQNASRNFAIVH 65
           V  + GG QG      +T ++P     V   +K V+A   KL  QN + N A +H
Sbjct: 419 VRGLAGGGQGPRTGARLTPVIP-----VTVKAKAVVAGPGKLFTQNGNLNAAKIH 468


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,428,517
Number of Sequences: 37544
Number of extensions: 153921
Number of successful extensions: 333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 5
length of query: 176
length of database: 14,793,348
effective HSP length: 77
effective length of query: 99
effective length of database: 11,902,460
effective search space: 1178343540
effective search space used: 1178343540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)