GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC055088-1|AAH55088.1|  209|Homo sapiens MRPL21 protein protein.       82   9e-16
BC132827-1|AAI32828.1|  949|Homo sapiens CCDC66 protein protein.       29   6.6  
BC047509-1|AAH47509.1|  831|Homo sapiens coiled-coil domain cont...    29   6.6  

>BC055088-1|AAH55088.1|  209|Homo sapiens MRPL21 protein protein.
          Length = 209

 Score = 82.2 bits (194), Expect = 9e-16
 Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 44  EVIATCNKLIEQNA-SRNFAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAA 102
           EV+   N++I      R FA+VH   +QW+VT  DL+++        G++I L+KVL+  
Sbjct: 82  EVVKKVNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILIGNELDLACGERIRLEKVLLVG 141

Query: 103 TKDFSLIGRPLVQPGLVTVTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINS 162
             +F+L+G+PL+   LV V AT+I K  S  R          F +       QT+LRINS
Sbjct: 142 ADNFTLLGKPLLGKDLVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINS 201

Query: 163 VEI 165
           +EI
Sbjct: 202 IEI 204


>BC132827-1|AAI32828.1|  949|Homo sapiens CCDC66 protein protein.
          Length = 949

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 27  VTSLVPSENKSVAETSKEVIATC-NKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYW 85
           + S VP+ENKSV    +E    C  K+  +N  +   I   LG++       L   +  W
Sbjct: 209 MVSSVPAENKSVLNEHQETSKQCEQKIAIENEWKPADIFSTLGER-ECDRSSLEAKKAQW 267

Query: 86  PPNIGDQITLDK 97
              + +Q+ L K
Sbjct: 268 RKELDEQVALKK 279


>BC047509-1|AAH47509.1|  831|Homo sapiens coiled-coil domain
           containing 66 protein.
          Length = 831

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 27  VTSLVPSENKSVAETSKEVIATC-NKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYW 85
           + S VP+ENKSV    +E    C  K+  +N  +   I   LG++       L   +  W
Sbjct: 92  MVSSVPAENKSVLNEHQETSKQCEQKIAIENEWKPADIFSTLGER-ECDRSSLEAKKAQW 150

Query: 86  PPNIGDQITLDK 97
              + +Q+ L K
Sbjct: 151 RKELDEQVALKK 162


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,219
Number of Sequences: 224733
Number of extensions: 770168
Number of successful extensions: 1121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 73,234,838
effective HSP length: 85
effective length of query: 91
effective length of database: 54,132,533
effective search space: 4926060503
effective search space used: 4926060503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)