GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3114|AAF49183.2|  201|Drosophila melanogaster CG9730-PA...   159   3e-39
AY122233-1|AAM52745.1|  418|Drosophila melanogaster RE67845p pro...    30   1.5  
AE014134-2138|AAF53149.1|  525|Drosophila melanogaster CG6766-PA...    30   1.5  
AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p pro...    29   3.5  
AY129439-1|AAM76181.1|  751|Drosophila melanogaster LD08185p pro...    29   3.5  
AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-P...    29   3.5  
AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-P...    29   3.5  

>AE014296-3114|AAF49183.2|  201|Drosophila melanogaster CG9730-PA
           protein.
          Length = 201

 Score =  159 bits (385), Expect = 3e-39
 Identities = 76/181 (41%), Positives = 117/181 (64%), Gaps = 14/181 (7%)

Query: 4   LRSGLQRVANIFGGTQGGILSRFVTSLVPSENKSVAET----------SKEVIATCNKLI 53
           +R  L+ V N    T G +    ++ ++  +NK   E+           KE ++ C ++ 
Sbjct: 8   MRQMLRHVPNRSLLTAGAMRPLSISPVIGQQNKPATESVDLSAIAKDQQKECLSICERIN 67

Query: 54  EQ----NASRNFAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLI 109
            Q       R FA+VH+ GKQ++VT GD+++VEGYWPP IGD+I+LDKVL+A  +DF+L+
Sbjct: 68  RQVQKSEQGRLFAVVHLCGKQFKVTPGDIILVEGYWPPTIGDEISLDKVLLAGARDFTLV 127

Query: 110 GRPLVQPGLVTVTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSVEIGNKI 169
           GRP+++PGL+ V AT++ K LSHT+THF      Q+MRINFQR+  T++RINS+E+   +
Sbjct: 128 GRPILEPGLILVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSIELARPV 187

Query: 170 N 170
           +
Sbjct: 188 D 188


>AY122233-1|AAM52745.1|  418|Drosophila melanogaster RE67845p
           protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 39  AETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLV-----VEGYWPPNIGDQI 93
           AE +KE+   C    E    R  +++    K+W  ++ DLLV      E  WP   GD +
Sbjct: 239 AEETKELSIQCFNS-ESKPHRPLSMLRSELKEWVESEADLLVFKEKATENLWPKTDGDLV 297

Query: 94  TLD 96
           TL+
Sbjct: 298 TLN 300


>AE014134-2138|AAF53149.1|  525|Drosophila melanogaster CG6766-PA
           protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 39  AETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLV-----VEGYWPPNIGDQI 93
           AE +KE+   C    E    R  +++    K+W  ++ DLLV      E  WP   GD +
Sbjct: 239 AEETKELSIQCFNS-ESKPHRPLSMLRSELKEWVESEADLLVFKEKATENLWPKTDGDLV 297

Query: 94  TLD 96
           TL+
Sbjct: 298 TLN 300


>AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 33   SENKSVAETSKEVIATCNKLIEQNASRNFAIV 64
            S +KSVA+ +  ++   NK IE  + +NF ++
Sbjct: 983  SASKSVAKAANYLVEAANKAIESESGKNFELI 1014


>AY129439-1|AAM76181.1|  751|Drosophila melanogaster LD08185p
           protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 33  SENKSVAETSKEVIATCNKLIEQNASRNFAIV 64
           S +KSVA+ +  ++   NK IE  + +NF ++
Sbjct: 610 SASKSVAKAANYLVEAANKAIESESGKNFELI 641


>AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-PB,
           isoform B protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 33  SENKSVAETSKEVIATCNKLIEQNASRNFAIV 64
           S +KSVA+ +  ++   NK IE  + +NF ++
Sbjct: 946 SASKSVAKAANYLVEAANKAIESESGKNFELI 977


>AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-PA,
            isoform A protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 33   SENKSVAETSKEVIATCNKLIEQNASRNFAIV 64
            S +KSVA+ +  ++   NK IE  + +NF ++
Sbjct: 983  SASKSVAKAANYLVEAANKAIESESGKNFELI 1014


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,222,755
Number of Sequences: 52641
Number of extensions: 251674
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 24,830,863
effective HSP length: 80
effective length of query: 96
effective length of database: 20,619,583
effective search space: 1979479968
effective search space used: 1979479968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)