GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46937-6|CAH10805.1|  171|Caenorhabditis elegans Hypothetical pr...   101   3e-22
Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    28   4.3  

>Z46937-6|CAH10805.1|  171|Caenorhabditis elegans Hypothetical
           protein F43C1.6 protein.
          Length = 171

 Score =  101 bits (242), Expect = 3e-22
 Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)

Query: 10  RVANIFGGTQGGILSRFV--TSLVPSENKSVAETS---KEVIATCNKLI-EQNASRNFAI 63
           R A++   +   IL R +   S+  S    V +T    KEV  + +  + E+   R FA+
Sbjct: 5   RCASLLLSSSQSILRRSIQSASVGTSSEAQVIDTEQVQKEVFKSISDEVNEEKRQRLFAV 64

Query: 64  VHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTA 123
           V++ G+QW+V+DGDL+ +EG  P N+GD+I L+KVL+    +FSL GRPL+    VTV A
Sbjct: 65  VYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPLLDASAVTVDA 124

Query: 124 TIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSV 163
            ++ K  ++   H+      Q   +N++  + T+LRI SV
Sbjct: 125 VVVEKKTTNPELHYVHLNHHQTKFLNWKSDEATVLRIKSV 164


>Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical
          protein C18D1.1 protein.
          Length = 645

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 18 TQGGILSRFVTSLVPSENKSVAETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGD 77
          T GG  S   +S  PS +  +AET ++ +   ++LI+   + N  +  IL +Q    D +
Sbjct: 35 TSGGSASPTSSSGAPSSSSIMAETDEKDMFMPSQLIQNGLANNQLMSMILQQQSNQADSN 94

Query: 78 L 78
          +
Sbjct: 95 I 95


>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 73  VTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSH 132
           VTD  +  +E Y+P N  DQ  L+K    ++  ++ IG    Q G  +    I+S  L+ 
Sbjct: 11  VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYT-IGLGQQQMGFCSDNEDIVSISLTV 69

Query: 133 TR 134
           TR
Sbjct: 70  TR 71


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 73  VTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSH 132
           VTD  +  +E Y+P N  DQ  L+K    ++  ++ IG    Q G  +    I+S  L+ 
Sbjct: 7   VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYT-IGLGQQQMGFCSDNEDIVSISLTV 65

Query: 133 TR 134
           TR
Sbjct: 66  TR 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,829
Number of Sequences: 27539
Number of extensions: 128014
Number of successful extensions: 254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 4
length of query: 176
length of database: 12,573,161
effective HSP length: 77
effective length of query: 99
effective length of database: 10,452,658
effective search space: 1034813142
effective search space used: 1034813142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)