GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 44  EVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAAT 103
           EVI+  + +++QN  ++   +  +G  +    G     E    P  G   TL +  +   
Sbjct: 819 EVISDFDAILDQNKFKDIIKIKTIGSTYMAASGITESAESEDGPRWGHLSTLVEFALELK 878

Query: 104 KDFSLI 109
           K  S I
Sbjct: 879 KALSSI 884


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 78  LLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTV 121
           L V+  Y P + G+++TL   ++ +   F L+   ++ P  + V
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 78  LLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTV 121
           L V+  Y P + G+++TL   ++ +   F L+   ++ P  + V
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,497
Number of Sequences: 429
Number of extensions: 1467
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 140,377
effective HSP length: 54
effective length of query: 122
effective length of database: 117,211
effective search space: 14299742
effective search space used: 14299742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)