GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002829-TA|BGIBMGA002829-PA|IPR001787|Ribosomal protein
L21
         (176 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ...    60   6e-10
At4g30930.1 68417.m04391 50S ribosomal protein L21, mitochondria...    47   8e-06
At4g17120.1 68417.m02578 expressed protein                             29   2.3  
At5g47300.1 68418.m05831 F-box family protein contains Pfam PF00...    27   9.4  
At2g42980.1 68415.m05332 aspartyl protease family protein contai...    27   9.4  

>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
           CL21 (RPL21) identical to 50S ribosomal protein L21,
           chloroplast precursor (CL21) [Arabidopsis thaliana]
           SWISS-PROT:P51412
          Length = 220

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 22  ILSRFVTSLVPSENKSVAETSKEVIATCNKLIEQNASRN--FAIVHILGKQWRVTDGDLL 79
           +  +F  S+V +E ++  +    V++  +++ E+ A R   FA++ + G+Q+ V  G  L
Sbjct: 61  VAPKFAESVVEAEPETT-DIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYL 119

Query: 80  VVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSHTRTHFXX 139
             +     N+ DQI L+KVL+  TK  + IG+P+V     TV A + S+GL+     F  
Sbjct: 120 YTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTN--ATVHAVVESQGLNDKVVVFKY 177

Query: 140 XXXXQFMRINFQRAQQTILRINSV 163
               ++ R    R   T +RI  +
Sbjct: 178 KPKKKYRRNIGHRQPNTRIRITGI 201


>At4g30930.1 68417.m04391 50S ribosomal protein L21, mitochondrial
           (RPL21M) identical to SP|Q8L9A0 50S ribosomal protein
           L21, mitochondrial precursor {Arabidopsis thaliana}
          Length = 270

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 61  FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVT 120
           FAIV I   Q++V++GD +  E     +I D++ L KVL+  +   ++IGRP++     T
Sbjct: 141 FAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPD--AT 198

Query: 121 VTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSVE 164
           V A +    L      F       + R    R + T LRI  ++
Sbjct: 199 VHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQ 242


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 76  GDLLVVEGYWPPN--IGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVT 122
           GD+  V GY PPN  +    T D+ ++ A  DF L+GR     G+ +++
Sbjct: 147 GDI-AVSGYEPPNSCVVLHDTSDQEILKAAVDFQLVGRVKKHRGVESIS 194


>At5g47300.1 68418.m05831 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (emb|CAB62106.1)
          Length = 416

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 38  VAETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYWP 86
           + +  K+ +  C+    ++      +VHI+G+  +V + +  V E  WP
Sbjct: 344 LVDAEKKFVVCCDNYFGEDEYDTKNLVHIVGENNKVREVNFGVSESSWP 392


>At2g42980.1 68415.m05332 aspartyl protease family protein contains
           pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 527

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 96  DKVLVAATKDFSLIGRPLVQPGLVTVT 122
           +KV    T D SL+G P V PG +  T
Sbjct: 122 EKVRKKITSDISLVGAPEVSPGKLIAT 148


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,228
Number of Sequences: 28952
Number of extensions: 124835
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 5
length of query: 176
length of database: 12,070,560
effective HSP length: 76
effective length of query: 100
effective length of database: 9,870,208
effective search space: 987020800
effective search space used: 987020800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)