GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002828-TA|BGIBMGA002828-PA|undefined
         (167 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3S4D5 Cluster: LysR-like regular protein; n=1; Polarom...    34   1.9  
UniRef50_Q7Z3X7 Cluster: CREB regulated transcription coactivato...    33   2.5  
UniRef50_A0U4D0 Cluster: Putative uncharacterized protein precur...    33   3.3  
UniRef50_A3TRG0 Cluster: Putative lipoprotein; n=1; Janibacter s...    33   4.4  
UniRef50_Q5Z7E3 Cluster: Putative uncharacterized protein OSJNBa...    32   5.8  
UniRef50_UPI000065D003 Cluster: Homolog of Homo sapiens "Ifapsor...    32   7.6  
UniRef50_Q89PB7 Cluster: Blr3565 protein; n=1; Bradyrhizobium ja...    32   7.6  
UniRef50_Q8VVB1 Cluster: Putative transcriptionnal repressor; n=...    32   7.6  
UniRef50_Q7JN85 Cluster: Twitchin; n=6; Bilateria|Rep: Twitchin ...    32   7.6  

>UniRef50_Q3S4D5 Cluster: LysR-like regular protein; n=1;
           Polaromonas naphthalenivorans CJ2|Rep: LysR-like regular
           protein - Polaromonas naphthalenivorans (strain CJ2)
          Length = 301

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 40  HCNGTIFSNIRTSTWHTYSSPYEHTGFGPPSKRAGREAFTREQQPGSRARLDRDG-CQRT 98
           H  GT+   +R++ W  Y  P      GPP++ + +     E QPGS   +D    CQ  
Sbjct: 244 HFAGTVCRAMRSAIWSCYVPPS-----GPPARHSNQPLLACEVQPGSLQHVDSTARCQAL 298

Query: 99  WRQ 101
            RQ
Sbjct: 299 RRQ 301


>UniRef50_Q7Z3X7 Cluster: CREB regulated transcription coactivator 2
           (Transducer of regulated cAMP response element-binding
           protein (CREB) 2); n=26; Euteleostomi|Rep: CREB
           regulated transcription coactivator 2 (Transducer of
           regulated cAMP response element-binding protein (CREB)
           2) - Homo sapiens (Human)
          Length = 693

 Score = 33.5 bits (73), Expect = 2.5
 Identities = 20/71 (28%), Positives = 28/71 (39%)

Query: 22  PVSDRESTKIHWLVVHTSHCNGTIFSNIRTSTWHTYSSPYEHTGFGPPSKRAGREAFTRE 81
           P+    ST+ H LV         + S +R  T H  SSPY      PP + + R      
Sbjct: 91  PLDSSRSTRHHGLVERVQRDPRRMVSPLRRYTRHIDSSPYSPAYLSPPPESSWRRTMAWG 150

Query: 82  QQPGSRARLDR 92
             P  + +L R
Sbjct: 151 NFPAEKGQLFR 161


>UniRef50_A0U4D0 Cluster: Putative uncharacterized protein
           precursor; n=1; Burkholderia cenocepacia MC0-3|Rep:
           Putative uncharacterized protein precursor -
           Burkholderia cenocepacia MC0-3
          Length = 555

 Score = 33.1 bits (72), Expect = 3.3
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 70  SKRAGREAFTREQQPGSRARLDRDGCQRTWRQGLRVRALMVAALDRGEARARD 122
           S+R GR    R ++     R DR+G QR  RQGL  R + VA   RG+A   D
Sbjct: 92  SQRQGRVELHRSERQAP-VRRDREGRQRGRRQGL--RRVSVAEAGRGQAAGED 141


>UniRef50_A3TRG0 Cluster: Putative lipoprotein; n=1; Janibacter sp.
           HTCC2649|Rep: Putative lipoprotein - Janibacter sp.
           HTCC2649
          Length = 396

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 68  PPSKRAGREAFTREQQPGSRARLDRDGCQRTWRQGLRVRALMVAALDRGEAR 119
           PP++RA R    R+Q  G       +  Q  WR+  R      +A DR E R
Sbjct: 15  PPARRADRRRTERDQHRGHERGPRHEASQERWRRDRREHHRAESARDRSERR 66


>UniRef50_Q5Z7E3 Cluster: Putative uncharacterized protein
           OSJNBa0092H22.21; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0092H22.21 - Oryza sativa subsp. japonica (Rice)
          Length = 193

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 65  GFGPPSKRAGREAFTREQQPGSRARLDRDGCQ-RTWRQGLRVRALMVAALDRGEAR 119
           G   P+ R+G+        PG R R  + GCQ R  R+G R R       DRGE R
Sbjct: 24  GSAGPAARSGKGGMGGAAAPGRRGRRRQPGCQIRQGREGRRGRRRQT---DRGEGR 76


>UniRef50_UPI000065D003 Cluster: Homolog of Homo sapiens
           "Ifapsoriasin; n=1; Takifugu rubripes|Rep: Homolog of
           Homo sapiens "Ifapsoriasin - Takifugu rubripes
          Length = 519

 Score = 31.9 bits (69), Expect = 7.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 42  NGTIFSNIRTSTWHTYSSPYEHTGFGPPSK--RAGREAFTREQQPGSRARLDRDGCQRTW 99
           +GT     R +TW T    +E++G  P  +   +GR A  + +  G+     RD   RT 
Sbjct: 130 SGTTVGEQRDNTWRTVGQQWENSGTTPGEQWDNSGRTAGQQRENSGTTVGEQRDNSGRTA 189

Query: 100 RQGL 103
            Q L
Sbjct: 190 GQHL 193


>UniRef50_Q89PB7 Cluster: Blr3565 protein; n=1; Bradyrhizobium
           japonicum|Rep: Blr3565 protein - Bradyrhizobium
           japonicum
          Length = 131

 Score = 31.9 bits (69), Expect = 7.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 54  WHTYSSPYEHTGFGPPSKRAGREAFTREQQPGSRARLDRDGCQRTWRQGLR 104
           W T  SP    G+  P ++ G  +F   Q PG   R +   C R  R+  R
Sbjct: 76  WPTSGSPVIQAGWIAPRRQIGNRSF--RQNPGISLRCEHPACARERRESFR 124


>UniRef50_Q8VVB1 Cluster: Putative transcriptionnal repressor; n=1;
           uncultured bacterium|Rep: Putative transcriptionnal
           repressor - uncultured bacterium
          Length = 377

 Score = 31.9 bits (69), Expect = 7.6
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 67  GPPSKRAGREAFT-REQQPGSRARLDRDGCQRTWRQGLRVRALMVAALDRGEARAR 121
           G  ++ A R A T R +  G    LD DG  R +RQG R RA   AA    ++RAR
Sbjct: 279 GGRTRSAARRASTERVRMAGEAFTLDADGGHRAYRQGGRTRA-TPAAPAPADSRAR 333


>UniRef50_Q7JN85 Cluster: Twitchin; n=6; Bilateria|Rep: Twitchin -
            Caenorhabditis elegans
          Length = 6048

 Score = 31.9 bits (69), Expect = 7.6
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 25   DRESTKI-HWLVVHTSHCNGTIFSNIRTSTWHTYS---SPYEHTGFGPPSKRAGREAFTR 80
            +R+  K   W+ V+TS   GT FS+ R    HTY          G G PS  +   A  +
Sbjct: 3271 ERKDAKTGRWIKVNTSPVQGTAFSDTRVQKGHTYEYRVVAVNKAGPGQPSD-SSAAATAK 3329

Query: 81   EQQPGSRARLDRDG 94
                  +  LD DG
Sbjct: 3330 PMHEAPKFDLDLDG 3343


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,329,284
Number of Sequences: 1657284
Number of extensions: 5700551
Number of successful extensions: 11979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11976
Number of HSP's gapped (non-prelim): 10
length of query: 167
length of database: 575,637,011
effective HSP length: 95
effective length of query: 72
effective length of database: 418,195,031
effective search space: 30110042232
effective search space used: 30110042232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 69 (31.9 bits)