GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002828-TA|BGIBMGA002828-PA|undefined
         (167 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   7.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   9.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   9.3  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   9.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   9.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   9.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    20   9.3  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 67  GPPSKRAGREAFTREQQPG 85
           G PSKR G  AF    + G
Sbjct: 355 GDPSKRKGTYAFRTPDENG 373


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 57  YSSPYEHTGFGPPSKRAGREAFTREQQP 84
           Y  P  H+  GPP     R     + QP
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 57  YSSPYEHTGFGPPSKRAGREAFTREQQP 84
           Y  P  H+  GPP     R     + QP
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 45  IFSNIRTSTWHTY 57
           +F+N  T  WHTY
Sbjct: 148 LFANGITFGWHTY 160


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 57  YSSPYEHTGFGPPSKRAGREAFTREQQP 84
           Y  P  H+  GPP     R     + QP
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQP 111


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
          protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 46 FSNIRTSTWHTYSSPYEHTGFGP 68
          +  +RTS  H ++SP  +   GP
Sbjct: 34 YGPLRTSYQHHFNSPAGNAHTGP 56


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 57  YSSPYEHTGFGPPSKRAGREAFTREQQP 84
           Y  P  H+  GPP     R     + QP
Sbjct: 84  YYHPQLHSHHGPPIHHQIRPPILHDTQP 111


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,124
Number of Sequences: 317
Number of extensions: 1251
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 167
length of database: 114,650
effective HSP length: 52
effective length of query: 115
effective length of database: 98,166
effective search space: 11289090
effective search space used: 11289090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)