GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002828-TA|BGIBMGA002828-PA|undefined
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   5.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   5.8  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.8  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   5.8  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   5.8  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.7  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 94   GCQRT---WRQGLRVRALMVAALDRGE 117
            GCQR    W++ LR+R+L+++  D  E
Sbjct: 1478 GCQRNVDVWQRMLRIRSLVISPRDNME 1504


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 17   RITKPPVSDRESTKIHWLVVHTSHCNGTIFSNIRTSTWHTYSSPYEHTGFGPPSKRAGRE 76
            +I  PP    E+ ++   ++ T  C+   F N  +  +H  S P      G    R G+E
Sbjct: 2607 KILSPPNILDENLRLAASLITTDSCSSRTFQNALSVMFHLSSIPKAKILIGKELLRHGQE 2666


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 44  TIFSNIRTSTWHTYSSPYEHTGFGPPSKRAGREAFTREQQPGSRARLD 91
           +I SN+      T +S     GFG  S  AG+        P S    D
Sbjct: 245 SIISNLENKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSD 292


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 60  PYEHTGFGPPSKRAGREAFTREQQPGSRARLD-RDG 94
           P EH     P  + GRE F      G R R + RDG
Sbjct: 81  PVEHERNWQPELKHGRERFRERDYEGRRDRKERRDG 116


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 68  PPSKRAGREAFTREQQPGSRARLD 91
           PPS++  ++A+T  ++PG  +  D
Sbjct: 479 PPSQKTNQDAWTNRKRPGYSSSFD 502


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 8  SAPYQSDRF-RITKPPVSDRESTKIHWLVVHTSHCNGTIFSNIRTSTWHTYSSPYE 62
          SA Y  D F  I+K P+  +   K   + V  + C  T  +   ++    Y+SP++
Sbjct: 34 SAEYLYDSFVEISKLPLEKKLPLKWKLITVKENICTKTNLTTAASNMLKDYNSPFD 89


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,681
Number of Sequences: 5004
Number of extensions: 21815
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 6
length of query: 167
length of database: 2,362,478
effective HSP length: 68
effective length of query: 99
effective length of database: 2,022,206
effective search space: 200198394
effective search space used: 200198394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)