GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002828-TA|BGIBMGA002828-PA|undefined
         (167 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    31   0.47 
04_04_0556 + 26221296-26221758,26223097-26223260,26223337-262234...    29   1.4  
03_05_0390 - 23738892-23739392                                         28   4.4  
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    27   5.8  
08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757           27   7.7  

>03_05_0105 -
          20861130-20861384,20861472-20862262,20862364-20862618,
          20862713-20862827,20862959-20863011,20863113-20863373,
          20863699-20863749,20863863-20864114,20864504-20864726,
          20865317-20865460
          Length = 799

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 41 CNGTIFSNIRTSTWHTYSSPYEHTGFGPPSKRAG 74
          C G ++ +I TS+ + YSS +EH G G P    G
Sbjct: 61 CVGILYGDIGTSSLYVYSSTFEH-GIGHPDDVVG 93


>04_04_0556 +
           26221296-26221758,26223097-26223260,26223337-26223434,
           26224031-26224220,26224321-26225424
          Length = 672

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 55  HTYSSPYEHTGFGPPSKRAGREAFTREQQPGSRARLDRDGCQRTWRQGLRVRALMVA 111
           H + +  +  G G   + A   A   E+ P S  R   D    +WR+ L VRA +V+
Sbjct: 24  HRHGAGKDANGVGTERQLAAAAAEGEEEGPSSVERAFVDRAVPSWREQLTVRAFVVS 80


>03_05_0390 - 23738892-23739392
          Length = 166

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 96  QRTWR----QGLRVRALMVAALDRGEARARDVLH 125
           +RTWR    + +R R LM +   R EAR RD  H
Sbjct: 16  RRTWRRWREEAMRRRGLMASRQRRVEARRRDATH 49


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/53 (32%), Positives = 22/53 (41%)

Query: 68  PPSKRAGREAFTREQQPGSRARLDRDGCQRTWRQGLRVRALMVAALDRGEARA 120
           P  +R  RE    E     RAR   +  +R W +    RA   AA  R E+ A
Sbjct: 52  PEEERRLRELEEAEADASERARRAFEDAERRWLEAAAARAAEKAAAAREESTA 104


>08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757
          Length = 202

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 92  RDGCQRTWRQGLRVRALMVAALDRG 116
           R GC R WR+  R+RA  VAA++ G
Sbjct: 42  RGGCTRRWRRRTRMRA--VAAVEGG 64


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,100,085
Number of Sequences: 37544
Number of extensions: 159208
Number of successful extensions: 344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 5
length of query: 167
length of database: 14,793,348
effective HSP length: 77
effective length of query: 90
effective length of database: 11,902,460
effective search space: 1071221400
effective search space used: 1071221400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)