GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002828-TA|BGIBMGA002828-PA|undefined
         (167 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4086|ABC66192.1|  201|Drosophila melanogaster CG34006-P...    29   2.4  
BT023850-1|AAZ86771.1| 1028|Drosophila melanogaster IP13787p pro...    28   7.4  
AE014296-1409|ABI31245.1| 1876|Drosophila melanogaster CG33274-P...    28   7.4  

>AE014297-4086|ABC66192.1|  201|Drosophila melanogaster CG34006-PA
           protein.
          Length = 201

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 42  NGTIFSNIRTSTWHTYSSPYEHTGFGPPSKRAGREAFTREQQPGSRARLDRDGC 95
           N TI   I TS++H+ S      G GP  + A R A  + + PG R  L+   C
Sbjct: 64  NSTI-PTIPTSSFHSISKRQTPLG-GPVLRSARRSAVLQRRNPGQRLELELKCC 115


>BT023850-1|AAZ86771.1| 1028|Drosophila melanogaster IP13787p
           protein.
          Length = 1028

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 39  SHCNG-TIFSNIRTST-WHTYSSPYEHTGFGPPSKRAGREAFTREQQPGS 86
           SH  G T+ +N+   T +H     Y   G GPPSK    +  T E  P S
Sbjct: 186 SHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQ--TMEDVPSS 233


>AE014296-1409|ABI31245.1| 1876|Drosophila melanogaster CG33274-PB
           protein.
          Length = 1876

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 39  SHCNG-TIFSNIRTST-WHTYSSPYEHTGFGPPSKRAGREAFTREQQPGS 86
           SH  G T+ +N+   T +H     Y   G GPPSK    +  T E  P S
Sbjct: 932 SHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQ--TMEDVPSS 979


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,730,867
Number of Sequences: 52641
Number of extensions: 268870
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 3
length of query: 167
length of database: 24,830,863
effective HSP length: 80
effective length of query: 87
effective length of database: 20,619,583
effective search space: 1793903721
effective search space used: 1793903721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)