GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002828-TA|BGIBMGA002828-PA|undefined
         (167 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.90 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 19  TKPPVSDRESTKIHWLVVHTSHCNGTIFS 47
           T+  + D  +    W +VH SH   TI S
Sbjct: 194 TEQILDDMYNNNTEWEIVHMSHSESTIDS 222


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 49  IRTSTWHTYSSPYEHTGFGP 68
           I+ +TW  +      TG GP
Sbjct: 489 IKQNTWTVFRDAITQTGTGP 508


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 32  HWLVVHTSHCNG 43
           +WL VHTS+ +G
Sbjct: 437 NWLPVHTSYKSG 448


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.131    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,846
Number of Sequences: 429
Number of extensions: 1448
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 167
length of database: 140,377
effective HSP length: 53
effective length of query: 114
effective length of database: 117,640
effective search space: 13410960
effective search space used: 13410960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)