Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002827-TA|BGIBMGA002827-PA|IPR002347|Glucose/ribitol
dehydrogenase
(276 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z73899-12|CAA98083.1| 284|Caenorhabditis elegans Hypothetical p... 31 1.2
Z73898-10|CAA98071.1| 284|Caenorhabditis elegans Hypothetical p... 31 1.2
Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF125956-3|AAD14726.3| 264|Caenorhabditis elegans Hypothetical ... 30 1.6
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un... 29 4.8
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 29 4.8
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 29 4.8
Z69664-5|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr... 28 6.3
U42832-2|AAA83572.1| 558|Caenorhabditis elegans Udp-glucuronosy... 28 6.3
AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormo... 28 8.4
>Z81035-3|CAB02732.1| 333|Caenorhabditis elegans Hypothetical
protein C15H11.4 protein.
Length = 333
Score = 37.1 bits (82), Expect = 0.014
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 4 VALVVGAASNLGYQVLKKLTETHKGKIYFTTEDDTAGFNILKSLERPDIE---ISYLQMD 60
VA+V G+ +G++ +++L K +Y + + L R + + +++ D
Sbjct: 48 VAVVTGSNCGIGFETVRELN-LRKADVYMLCRSEEKANEAKRMLVRQGCDATRLHFIECD 106
Query: 61 ITYTKSIIRLRHYIQDLDERIDLLINITDYVAE-KNLSNFEKIRRTLSVNFYGYINFGKL 119
+T +S+ R + + ID+LIN + + K+ + +T N G +L
Sbjct: 107 LTDFESVRRAAKETLESTDTIDILINNAGIMFQSKHEQTKDGHEKTWQSNHLGPFLLTEL 166
Query: 120 VYPLLNEN--ARVVNVS 134
P + ++ AR++NVS
Sbjct: 167 FLPAVKKSSYARIINVS 183
>Z73899-12|CAA98083.1| 284|Caenorhabditis elegans Hypothetical
protein ZK829.1 protein.
Length = 284
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 185 MNVHAVSKVALNAVTFLQHREWADKGIIINCVNPGSLSGRDGRRTTKIYEEGAK 238
M +AV K AL+ ++ E+ KG+ +N VNPG +S R + ++ A+
Sbjct: 162 MPYYAVPKAALDQMSRSMAHEYMLKGVRLNTVNPGLVSTSFFARLPGVGDDNAR 215
>Z73898-10|CAA98071.1| 284|Caenorhabditis elegans Hypothetical
protein ZK829.1 protein.
Length = 284
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 185 MNVHAVSKVALNAVTFLQHREWADKGIIINCVNPGSLSGRDGRRTTKIYEEGAK 238
M +AV K AL+ ++ E+ KG+ +N VNPG +S R + ++ A+
Sbjct: 162 MPYYAVPKAALDQMSRSMAHEYMLKGVRLNTVNPGLVSTSFFARLPGVGDDNAR 215
>Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical
protein F01G4.2 protein.
Length = 258
Score = 30.7 bits (66), Expect = 1.2
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 4 VALVVGAASNLGYQVLKKLTETHKGKIYFTTEDDTAGFNILKSLERPDIEISYLQMDITY 63
VALV G AS LG + L + ++ + G ++ K +I + +T
Sbjct: 11 VALVTGGASGLGKGAAEVLAKAG-AQVAILDLPQSKGADVAK-----EIGGIFTPASVTS 64
Query: 64 TKSIIRLRHYIQDLDERIDLLINITDY--------VAEKNLSNFEKIRRTLSVNFYGYIN 115
+ + +Q R+D L+N V +K +FEKIR+T+ VN G N
Sbjct: 65 EEEVRAAFAKVQAEYGRLDALVNCAGIAYAFKLYSVQKKKHVDFEKIRQTIDVNVLGTFN 124
Query: 116 FGKLVYPLLNENARVVN 132
+ L+ E+ + N
Sbjct: 125 VIRHGVALMGEHEKDAN 141
>AF125956-3|AAD14726.3| 264|Caenorhabditis elegans Hypothetical
protein DC2.5 protein.
Length = 264
Score = 30.3 bits (65), Expect = 1.6
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 23/176 (13%)
Query: 48 ERPDIEISYLQMDITYTKSIIRL-RHYIQDLDERIDLLINITDYVAEKNLSNFEKIRRTL 106
E PD I +Q D++ S+ + Y+ L++N + K + ++
Sbjct: 19 ETPDARIDIVQCDLSSLASVKKTAEEYLTKKWPLHGLILN-AGVLGRKEKTTADRFEAHF 77
Query: 107 SVNFYGYINFGKLVYPLLNENA--RVVNVSGPAGLLATIENEDIRKRISDPTLTEDELVA 164
+N + K + P+L +A R+V +S +I N D + E++L
Sbjct: 78 GINHLAHFLLIKELLPVLRSSAPSRIVILSSTLSKFTSI-NPDSK--------IEEKLGT 128
Query: 165 LIQEYEHAARRGVEKTEGWGMNVHAVSKVALNAVTFLQHREWADKGIIINCVNPGS 220
L + TE W ++A SK+ + F HR+ + GI + V+PGS
Sbjct: 129 LCPK---------NATE-WYYRLYAKSKMCNMLIAFKLHRDEFENGISVYSVHPGS 174
>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform a protein.
Length = 1837
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 42 NILKSLERPDIEISYLQMDITYTKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEK 101
N+ K L ++EI LQ + +++S R LDE + T +A++N+ +K
Sbjct: 1344 NLTKMLTNQNLEIERLQQQLRFSESQTVFRPSDCSLDEAVRGAHKQTQLLAQQNMDLNDK 1403
Query: 102 IRR 104
+ R
Sbjct: 1404 LTR 1406
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 42 NILKSLERPDIEISYLQMDITYTKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEK 101
N+ K L ++EI LQ + +++S R LDE + T +A++N+ +K
Sbjct: 1346 NLTKMLTNQNLEIERLQQQLRFSESQTVFRPSDCSLDEAVRGAHKQTQLLAQQNMDLNDK 1405
Query: 102 IRR 104
+ R
Sbjct: 1406 LTR 1408
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 42 NILKSLERPDIEISYLQMDITYTKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEK 101
N+ K L ++EI LQ + +++S R LDE + T +A++N+ +K
Sbjct: 1346 NLTKMLTNQNLEIERLQQQLRFSESQTVFRPSDCSLDEAVRGAHKQTQLLAQQNMDLNDK 1405
Query: 102 IRR 104
+ R
Sbjct: 1406 LTR 1408
>Z69664-5|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical protein
K04D7.5 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 70 LRHYIQDLDERI----DLLINITDYVAEKNLSNFEKIRRTLSV 108
+R I+D+++R+ D + + ++NL++FEK+ RT+ +
Sbjct: 1048 MRKVIEDVNQRLFMHTDTYQRFKEAITDENLTDFEKVTRTIII 1090
>U42832-2|AAA83572.1| 558|Caenorhabditis elegans
Udp-glucuronosyltransferase protein57 protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 58 QMDITYTKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEKIRRTLSVNFYGYINFG 117
Q+ + S++ RH + LDE I + TDY +K NF + + ++N
Sbjct: 213 QLGLPAVSSLVSSRHRL--LDEPITNIFR-TDYTIKKRFKNFPNVNTLKQQSAAYFVNTD 269
Query: 118 KLVYPLLNENARVVNVSG 135
L+ P V+ V G
Sbjct: 270 PLLEPPRALPLNVIPVGG 287
>AF022978-2|AAG24183.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 130 protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 38 TAGFNILKSLERPDIEISYLQMDITYTKSIIRLRHYIQDLDERI--DLLINITD-YVAEK 94
T+ + L SLE DIE++Y+ + + + R I ++ E+ +L N+ D YV E
Sbjct: 328 TSALDPLTSLEPTDIELTYMLCQLCFHYAGKRYGGEILEVTEKFQENLADNLHDYYVNEL 387
Query: 95 NLSNF-EKIRRTLSVN 109
N+ + ++ + L +N
Sbjct: 388 NMPRYCGRLNQMLKIN 403
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.136 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,630,182
Number of Sequences: 27539
Number of extensions: 265280
Number of successful extensions: 737
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 11
length of query: 276
length of database: 12,573,161
effective HSP length: 80
effective length of query: 196
effective length of database: 10,370,041
effective search space: 2032528036
effective search space used: 2032528036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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