GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002827-TA|BGIBMGA002827-PA|IPR002347|Glucose/ribitol
dehydrogenase
         (276 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    34   0.001
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.2  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   5.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 4   VALVVGAASNLGYQVLKKLTETHKGKIYFTTEDDTAGFNILKSLERPDIEISYLQMDITY 63
           VALV GA S +G  +++ L       I    + D     +++ L+    ++  LQ D++ 
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMK-TLVEELKSKPGKLVPLQCDLSN 67

Query: 64  TKSIIRLRHYIQDLDERIDLLINITDYVAEKNLSNFEKI--RRTLSVNFYGYINFGKLVY 121
              I+++  +++     ID+LIN      +  L N E +  ++   +N  G     + V 
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVL 127

Query: 122 PLLNE----NARVVNVSGPAGL 139
            L+ +    N  +VN++  +GL
Sbjct: 128 KLMKKKGINNGIIVNINDASGL 149


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 146 EDIRKRISDPTLTEDELV 163
           E+ R+R +D  LTE+E+V
Sbjct: 53  EEARQRANDAGLTEEEVV 70


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)

Query: 62  TYTKSIIRLRHYIQDLDERIDLLINITDY 90
           TY    I L+H  Q++ +++++ I++ +Y
Sbjct: 167 TYDGIQIDLKHINQNMGDKVEIGIDLREY 195


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
          protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 11 ASNLGYQVLKKLTETHKGKIY 31
          A++L  + +KK  ET+K  IY
Sbjct: 55 AAHLNAEGMKKYCETYKNSIY 75


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 83  LLINITDYVAEKNLSNFEKIRRTL 106
           LLIN+  Y+  K+    +KI++T+
Sbjct: 102 LLINVVKYLGGKHKFISKKIKKTM 125


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 12 SNLGYQVLKKLTETHKGKIYFTTEDD 37
          SN+ +  LKKL ++ + +I    E++
Sbjct: 38 SNMTFHELKKLRDSSEARIKLINEEE 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,362
Number of Sequences: 429
Number of extensions: 3176
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 276
length of database: 140,377
effective HSP length: 57
effective length of query: 219
effective length of database: 115,924
effective search space: 25387356
effective search space used: 25387356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)