GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002826-TA|BGIBMGA002826-PA|undefined
         (78 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   0.91 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   1.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    24   2.1  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    24   2.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           24   2.8  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   6.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    23   6.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   6.4  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    23   6.4  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    22   8.5  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    22   8.5  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    22   8.5  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 5   NMGTNMICNLQANFKTLSGNFN 26
           NMGTNM  N+ AN   + G  +
Sbjct: 223 NMGTNMGANMGANMNAIRGGLH 244


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 1   MTAPNMGTNMICNLQANFKTLSGNFNDMRYSLSAIPPYSASRLVFTDKAY 50
           +TA  + + +  ++  N+ +LS  F  M ++  +IP + +S L F  + +
Sbjct: 305 LTAVEVSSRLEGSVSFNWASLSALFQPMTFAKWSIPLFLSSALEFAQQRW 354


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 13  NLQANFKTLSGNFNDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPE 60
           +L+++++ L   F D R++    PP    + V + +A  + H   SPE
Sbjct: 423 SLKSDYEGLGRTF-DPRFAPRGSPPVRGGKNVLSPEAKEHTHKNISPE 469


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 47  DKAYYYKHACASPEVITNIGLRGT 70
           + AYYYK +   P  IT  G++ T
Sbjct: 435 ESAYYYKDSTDEPPPITTSGVQYT 458


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 28  MRYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNI 65
           +RYS S++P Y +S     D  + ++ +   P+ +  I
Sbjct: 673 LRYSSSSVPFYESSTCAPIDVVFQFESSSKWPDELEGI 710


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
          cytochrome c oxidase assembly protein Cox1101,
          mitochondrial ribosomal protein
          Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 16 ANFKTLSGNFNDMRYSL-SAIPPYSASRLVFTDK 48
          ANF+ +  NF+D +  L S+  P ++S L F  K
Sbjct: 42 ANFQAVQNNFSDYKNELISSHRPEASSLLDFLVK 75


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 37  PYSASRLVFTDKAYYYKHACASPEVITN 64
           PYS SRL+ T+K   Y+H      +I N
Sbjct: 580 PYSYSRLINTNKK-VYRHVRNGDMLILN 606


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
          cytochrome c oxidase assembly protein Cox1102,
          mitochondrial ribosomal protein
          Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 16 ANFKTLSGNFNDMRYSL-SAIPPYSASRLVFTDK 48
          ANF+ +  NF+D +  L S+  P ++S L F  K
Sbjct: 42 ANFQAVQNNFSDYKNELISSHRPEASSLLDFLVK 75


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 36  PPYSASRLVFTDKAYYYKHACASPEVI 62
           P + A R   T K Y Y+  CAS  V+
Sbjct: 483 PKFEAWRQASTYKDYCYRLHCASTPVL 509


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 2   TAPNMGTNMICNLQANFKTLSGNFNDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPEV 61
           T  ++G + + N + +F    G     ++ L  IP ++   L    +A     A  SPE 
Sbjct: 93  TPKSIGDDDLENREGSFDAPEGILTHGKHRLPTIPEWTKEDLAALSEAAARLQANPSPED 152

Query: 62  I 62
           I
Sbjct: 153 I 153


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 44  VFTDKAYYYKHACASP 59
           VFT+K+  Y+H   SP
Sbjct: 171 VFTEKSSDYRHGLGSP 186


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 57  ASPEVITNIGLRGTVAVKNPI 77
           A+ E+    GL+GT+A ++PI
Sbjct: 252 AAAELARRAGLQGTLAGRSPI 272


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,844
Number of Sequences: 5004
Number of extensions: 11473
Number of successful extensions: 26
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 12
length of query: 78
length of database: 2,362,478
effective HSP length: 58
effective length of query: 20
effective length of database: 2,072,246
effective search space: 41444920
effective search space used: 41444920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)