Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002826-TA|BGIBMGA002826-PA|undefined
(78 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1324 + 32659752-32661972,32662067-32662761 31 0.16
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 29 0.47
04_03_1025 + 21803807-21805249 29 0.47
03_02_0703 - 10535082-10536779 28 1.1
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 27 1.9
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 27 2.5
05_01_0565 - 4926137-4926847,4926928-4927257 26 4.4
06_03_1061 + 27282979-27286854 25 5.8
08_02_0860 + 21970888-21971833,21973400-21974127 25 7.7
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 22 SGNFNDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGLRGTVAVKNPIL 78
SG+F + +++A+P S +R V KA Y P + NI + G K +L
Sbjct: 667 SGDFKTITEAVNAVPKNSPTRFVIYVKAGEYNEYVTIPSSLPNIFMYGDGPTKTRVL 723
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 29.1 bits (62), Expect = 0.47
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 ANFKTLSGNFNDM-RYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGL 67
A F +SGN + R L +PP + SRL F Y + H SP GL
Sbjct: 16 AEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIF-HVLRSPPPAAADGL 67
>04_03_1025 + 21803807-21805249
Length = 480
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 11 ICNLQANFKTLSGNFNDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGLRG 69
+CN + T +++ ++ ++ A P ++A V A YK P TNI L G
Sbjct: 169 VCNASPSATTQRSDYSTVQAAIDAAPNHTAGHFVIKVAAGIYKENVVIPYEKTNILLVG 227
>03_02_0703 - 10535082-10536779
Length = 565
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 22 SGNFNDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGLRGTVAVKNPI 77
SG+F + +L+ +P S V KA YK + +TN+ + G A K I
Sbjct: 252 SGDFKTINEALAKVPVKSTGTYVMYVKAGTYKEYVSVARNVTNLVMIGDGATKTII 307
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.1 bits (57), Expect = 1.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 19 KTLSGNFNDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGLRGTVAVKNPI 77
KTL +D+ LS Y S + + DK Y H+ SPEVI+N+ + T NP+
Sbjct: 1916 KTLDEISHDLCPVLSIQQLYRISTMYWDDK--YGTHS-VSPEVISNMRVLMTEDSNNPV 1971
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 24 NFNDMRYSLSAIPPYSASR-LVFTDKAYYYKHACASPEVITNIGLRG 69
NF ++ +++A+P +S R +V+ +K YY+ P NI +G
Sbjct: 197 NFTTVQAAVNAVPSFSKKRNVVWINKGIYYEKVTV-PATKPNITFQG 242
>05_01_0565 - 4926137-4926847,4926928-4927257
Length = 346
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 11 ICNLQANFKTLSGNFNDMRYSLSAIPPYSASRLVFTDKAYYYK 53
+ N+ A + +SG+ D ++ + +PP + + L ++A K
Sbjct: 77 VWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVK 119
>06_03_1061 + 27282979-27286854
Length = 1291
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 30 YSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGL 67
Y S P + AS L + Y Y C+ E++ +GL
Sbjct: 825 YRGSTTPSWLASNLSLSSLEYLYLDYCSELEILPPLGL 862
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 22 SGNFNDMRYSLSAIPPYSASRLVFTDKAYYYK 53
SGN+ + ++ A P SASR V K YK
Sbjct: 242 SGNYTTVSAAVDAAPTESASRYVIYVKKGVYK 273
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,366
Number of Sequences: 37544
Number of extensions: 64948
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 9
length of query: 78
length of database: 14,793,348
effective HSP length: 57
effective length of query: 21
effective length of database: 12,653,340
effective search space: 265720140
effective search space used: 265720140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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