GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002826-TA|BGIBMGA002826-PA|undefined
         (78 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC037301-1|AAH37301.1|  799|Homo sapiens chromosome X open readi...    32   0.32 
AL096763-1|CAI42219.1|  799|Homo sapiens chromosome X open readi...    32   0.32 

>BC037301-1|AAH37301.1|  799|Homo sapiens chromosome X open reading
           frame 20 protein.
          Length = 799

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 16  ANFKTLSGNFNDMR-YSLSA-IPPYSASRLVFTD 47
           AN+ TL GN+N     SLS  IPPY A +++ T+
Sbjct: 319 ANYPTLMGNYNGQNTASLSVFIPPYFAEKIILTE 352


>AL096763-1|CAI42219.1|  799|Homo sapiens chromosome X open reading
           frame 20 protein.
          Length = 799

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 16  ANFKTLSGNFNDMR-YSLSA-IPPYSASRLVFTD 47
           AN+ TL GN+N     SLS  IPPY A +++ T+
Sbjct: 319 ANYPTLMGNYNGQNTASLSVFIPPYFAEKIILTE 352


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,091
Number of Sequences: 224733
Number of extensions: 361366
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 2
length of query: 78
length of database: 73,234,838
effective HSP length: 57
effective length of query: 21
effective length of database: 60,425,057
effective search space: 1268926197
effective search space used: 1268926197
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)