GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002826-TA|BGIBMGA002826-PA|undefined
         (78 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   2.1  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    25   4.8  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    25   4.8  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    25   6.4  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    25   6.4  
AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 26  NDMRYSLSAIPPYSASRLVFTDKAYYYKHACASPEVITNIGLRGTVAVKNP 76
           N++ ++ + +PP+      FT    Y    C  P+V++ IG      +++P
Sbjct: 90  NNIPFNQTFVPPFYDYLQDFTISPRYDISLCLIPKVVSTIGTAAICYIQDP 140


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 35  IPPYSASRLVFTDKAYYYKHACASPEVITNIGLRGTVAVKN 75
           +PP      +FTD  Y+Y     +   ++ I L  + +  N
Sbjct: 402 LPPSCVQHALFTDGTYFYSATLIANSTLSTIQLNDSFSPSN 442


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 35  IPPYSASRLVFTDKAYYYKHACASPEVITNIGLRGTVAVKN 75
           +PP      +FTD  Y+Y     +   ++ I L  + +  N
Sbjct: 402 LPPSCVQHALFTDGTYFYSATLIANSTLSTIQLNDSFSPSN 442


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 33   SAIPPYSASRLVFTDKAYYYKHACASPEVITNI 65
            S +PP S + +   + A  +K+   SP ++T +
Sbjct: 5466 SPLPPTSVTTVEHVEPAEIHKYRTTSPTIVTTV 5498


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 33   SAIPPYSASRLVFTDKAYYYKHACASPEVITNI 65
            S +PP S + +   + A  +K+   SP ++T +
Sbjct: 5466 SPLPPTSVTTVEHVEPAEIHKYRTTSPTIVTTV 5498


>AF040652-2|AAB95019.1|  221|Caenorhabditis elegans Hypothetical
          protein T05A8.2 protein.
          Length = 221

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 51 YYKHACASPEVITNIGLRGTVAVKNPIL 78
          +++   A+ +++   GL GTVAV  P++
Sbjct: 2  FFEFLAATAKLVAGTGLLGTVAVAIPVV 29


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,170
Number of Sequences: 27539
Number of extensions: 60621
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 12,573,161
effective HSP length: 58
effective length of query: 20
effective length of database: 10,975,899
effective search space: 219517980
effective search space used: 219517980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)