GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002825-TA|BGIBMGA002825-PA|undefined
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    30   0.80 
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   2.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   5.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   7.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   9.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   9.8  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 29  LVIGGCDGRHLLKTLAQAYRHNRRYMNLFVIDGCPEL 65
           L I GC+G H   TL++    NR    L  +DGC EL
Sbjct: 202 LDISGCEGFHNADTLSRLVSRNRGLKEL-SMDGCTEL 237


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 264 ICLGLDCEDKDMLKSTHGVNYKRSTDISERNVMRMMYEM--ENHKKFDVAEMEIENERNL 321
           ICL    E   +L+S H    K    ISE+ + + + E+  +N K+  + ++EI+   NL
Sbjct: 97  ICLWAPPEP--VLRSVHNTLLKMGWSISEKKMKKKLLELLAKNKKRRTMRKLEIDT--NL 152

Query: 322 GMVVLSEFDAKISECGP 338
             +   + D+ I E  P
Sbjct: 153 SFLTDVQRDSPIIENAP 169


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 248 GDLVTSPYGDLVTSPYIC--LGLDCEDKDMLKSTHGVNYKRSTDI 290
           GD++ SP+ D++ S + C         +D L S+ GV Y +   I
Sbjct: 435 GDIIVSPFKDMIYSVFECPKTLTQAVQQDTLISSFGVGYTQLKSI 479


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 311  AEMEIENERNLGMVVLSEFDAKISECGPEIPLVLRE 346
            A  +I + R+  MV LSE    + ECGP+  ++L E
Sbjct: 1069 ANDDIMSARSTFMVELSETKKILDECGPKSLVILDE 1104


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 387 QNMVSRIKPSLWSMARDDAVVIMESRKYMIELKRDDV 423
           +N++ ++KP L +  + D  +I+E  +Y  E  +D+V
Sbjct: 164 KNLMEQLKPLLQTECQFDKFLIVELFQYCFESSQDEV 200


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 360 HFLSVSALDHYPHKPQFQGLFHGVFVGQN----MVSRIKPSLWSMARDDAVVIMESRKYM 415
           H  S    D Y HKP   GLF  +    N      SR   S+ S   +D+  I   R+  
Sbjct: 23  HTFSSQTDDSYFHKPSSTGLFATLVADTNSSVPSASRSPESIASSQSNDSAAIPSYRRKR 82

Query: 416 IELKRDDV 423
            ++++ ++
Sbjct: 83  RKVRKPEI 90


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,648
Number of Sequences: 5004
Number of extensions: 95035
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 6
length of query: 469
length of database: 2,362,478
effective HSP length: 75
effective length of query: 394
effective length of database: 1,987,178
effective search space: 782948132
effective search space used: 782948132
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)