GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002825-TA|BGIBMGA002825-PA|undefined
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    31   2.0  
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    31   2.6  
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792     29   6.0  

>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 295  VMRMMYEMENHKKFDVAEMEIENERNLGMVVLSEFDAKISECGPEIPLVLRED----RET 350
            ++++  E +  + F V ++E+  +      V  +   K+   GP+IP+V R      R T
Sbjct: 3303 ILKLEEESKILRDFHVVDIELPGQYFTDQEVAPDHTVKLDRVGPDIPIVRRHGSSFRRLT 3362

Query: 351  YIDVDYGKVHFLSVSAL 367
             I  D  + HF+  ++L
Sbjct: 3363 LIGSDGSQRHFIVQTSL 3379


>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 285 KRSTDISERNVMRMMYEMENHKKFDVAEMEIENERNL 321
           K  TD++E  V+RM ++    +K D  EME E  + L
Sbjct: 344 KLGTDLTELRVLRMQHDENQRRKKDKQEMEDETMKRL 380


>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
          Length = 264

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 223 VCRPNVTFAAGVYKCGDRYL--HRGYLGDLVTSPYGDLVTSPYIC 265
           VCR   T  AGVY C D      R Y  D      GD V +  +C
Sbjct: 179 VCRGETTAGAGVYGCRDAATGPARAYAVDAAGGGGGDAVIAAVVC 223


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,893,502
Number of Sequences: 37544
Number of extensions: 568697
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 3
length of query: 469
length of database: 14,793,348
effective HSP length: 85
effective length of query: 384
effective length of database: 11,602,108
effective search space: 4455209472
effective search space used: 4455209472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)