GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002825-TA|BGIBMGA002825-PA|undefined
         (469 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical pr...    32   0.76 
Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical pr...    30   3.0  
Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical pr...    30   3.0  
Z81557-4|CAB04537.1|  331|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical
           protein F35H10.7 protein.
          Length = 511

 Score = 32.3 bits (70), Expect = 0.76
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 5   VSPALDLQQEYLKYGDEHAYELNFLVIGGCDGRHLLKTL 43
           V P  ++ +E    G+ H Y +NF+ +G CD  H L  L
Sbjct: 196 VQPLAEMFEEVRNRGNIHKYLINFVELGFCDEAHALTKL 234


>Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2b protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 3   WGVSPALDLQQEYLKYGDEHAYELNFLVIGGCDGRHLLKTLAQAYRH--NRRYMNLFVID 60
           W   PAL L  + L  G EH +EL ++    C+G        +  R+     ++N F+I 
Sbjct: 433 WLSPPALPLVTDPLFRGCEHTWELQYIFSTSCNG-FTCTAQDEILRNYFTTTWLN-FIIG 490

Query: 61  GCPELIARQLLLMSLALEKTTR 82
           G P      L    LA++ T R
Sbjct: 491 GNPTPAGSPLPFKWLAMDSTNR 512


>Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2a protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 3   WGVSPALDLQQEYLKYGDEHAYELNFLVIGGCDGRHLLKTLAQAYRH--NRRYMNLFVID 60
           W   PAL L  + L  G EH +EL ++    C+G        +  R+     ++N F+I 
Sbjct: 433 WLSPPALPLVTDPLFRGCEHTWELQYIFSTSCNG-FTCTAQDEILRNYFTTTWLN-FIIG 490

Query: 61  GCPELIARQLLLMSLALEKTTR 82
           G P      L    LA++ T R
Sbjct: 491 GNPTPAGSPLPFKWLAMDSTNR 512


>Z81557-4|CAB04537.1|  331|Caenorhabditis elegans Hypothetical
           protein F59A1.9 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 165 ELWEYRLRNSLGVRYDNRHGVYDWDYHMRLKEIASAVCFQEYKHFRE 211
           ++ EY LR S   +YD   G +D+D +   +E  + V   E+    E
Sbjct: 124 DIGEYSLRTSFKKKYDPNSGDFDYDTYAVHREYTNDVVEDEFGEIDE 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,993,977
Number of Sequences: 27539
Number of extensions: 504065
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 938
Number of HSP's gapped (non-prelim): 4
length of query: 469
length of database: 12,573,161
effective HSP length: 84
effective length of query: 385
effective length of database: 10,259,885
effective search space: 3950055725
effective search space used: 3950055725
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)