GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002825-TA|BGIBMGA002825-PA|undefined
         (469 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   3.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   7.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 397 LWSMARDDAVVIMESRKYMIELKRD 421
           ++S AR++A V+ E  +  IE+ RD
Sbjct: 160 IFSRAREEANVVPEGARVPIEIPRD 184


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 204 QEYKHFREHGVAFTWLETEVCRPNVTFAAGVYKCGDRYLHRGYLGDL 250
           ++  HF E GV   WL      P V F   +    D +   G + DL
Sbjct: 56  EKLDHFLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDL 102


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 204 QEYKHFREHGVAFTWLETEVCRPNVTFAAGVYKCGDRYLHRGYLGDL 250
           ++  HF E GV   WL      P V F   +    D +   G + DL
Sbjct: 56  EKLDHFLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDL 102


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
          acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 18 YGDEHAYELNFLVIGGCD 35
          +GDEH Y L   ++ G D
Sbjct: 1  FGDEHEYRLTKYLLDGYD 18


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,424
Number of Sequences: 429
Number of extensions: 6606
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 469
length of database: 140,377
effective HSP length: 60
effective length of query: 409
effective length of database: 114,637
effective search space: 46886533
effective search space used: 46886533
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)